hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-02463500/chunk_1/iprscan-20080808-02463500.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee04147 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05110.3.ls AF-4 proto-oncoprotein 2608.8 0 1 PF05110.3.fs AF-4 proto-oncoprotein 2606.7 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05110.3.fs 1/1 9 1210 .. 1 1422 [] 2606.7 0 PF05110.3.ls 1/1 9 1210 .. 1 1422 [] 2608.8 0 Alignments of top-scoring domains: PF05110.3.fs: domain 1 of 1, from 9 to 1210: score 2606.7, E = 0 *->YeeDRNaLRirErERRNQEvqQeedaFpssfpLFgEPYKvAEvTnKG Y++DRN+LRirE+ERRNQE++Qe++aFp+++pLFgEPYK T+KG ee04147 9 YNDDRNLLRIREKERRNQEAHQEKEAFPEKIPLFGEPYK----TAKG 51 DeLSsRIQnmLGnYDEMKdFLsdrSnqkhLVGiepkpGkPqtPlnkdeks DeLSsRIQnmLGnY+E+K+FLs++S++++L+++e+++GkP++Pl++d++s ee04147 52 DELSSRIQNMLGNYEEVKEFLSTKSHTHRLDASENRLGKPKYPLIPDKGS 101 fvasssfftqvhhGsHQsihttavGpapvgniSrkpksaQpsthsStsls +++sssf+t+vhh Qsiht+a+Gp++vgniS++pk+aQp+t++++sl+ ee04147 102 SIPSSSFHTSVHH---QSIHTPASGPLSVGNISHNPKMAQPRTEPMPSLH 148 apSvvilnsslltqDrkSqsgwsrdsrgksphdaeqrksqsnkmqtvTds a+S+++++s++ltqDr++q+g+ g+s+h++++r+++++++++vTds ee04147 149 AKSCGPPDSQHLTQDRLGQEGF-----GSSHHKKGDRRADGDHCASVTDS 193 aperkLsplisylpspVPPLSpigsvqassprsqeeSkshssgedsfKei aper+Lsplis lpspVPPLSpi+s+q+++pr+q++Sk+h+s+++s K++ ee04147 194 APERELSPLIS-LPSPVPPLSPIHSNQQTLPRTQGSSKVHGSSNNS-KGY 241 craKSpkdlevkvqdperPhDgLvaasslkasSsqhsvQtFPPPsLpSKs c+aKSpkdl+vkv+d+e+P+D+Lva ++q+++QtFPPPsLpSKs ee04147 242 CPAKSPKDLAVKVHDKETPQDSLVA-------PAQPPSQTFPPPSLPSKS 284 samQQKPTAYVRPMDGQDQAPdESpeLKlssEFEdyvqqssfgsltdlKP +amQQKPTAYVRPMDGQDQAP+ESpeLK+++E dy+qq++ ++tdlK+ ee04147 285 VAMQQKPTAYVRPMDGQDQAPSESPELKPLPE--DYRQQTF--EKTDLKV 330 saasaKAKLtKlkIPsQsvEaslsndvSCVEEILkEMTHSWPPPLTAIHT + aKAKLtKlk+PsQsvE+++sn+v+CVEEILkEMTHSWPPPLTAIHT ee04147 331 P---AKAKLTKLKMPSQSVEQTYSNEVHCVEEILKEMTHSWPPPLTAIHT 377 PskaEPSkFPFPtKdSQhvspGtqnQKqyDtsskthsNgqqst.SMLEDD Ps+aEPSkFPFPtKdSQhvs++tqnQKqyDtsskthsN+qq+t+SMLEDD ee04147 378 PSTAEPSKFPFPTKDSQHVSSVTQNQKQYDTSSKTHSNSQQGTsSMLEDD 427 LKLSssEDDLEPvKtLttqCtAsdeeQaveKtkprsaPpsavlqqPnapq L+LS+sED sd+eQ++eK++++saPp +apq ee04147 428 LQLSDSED--------------SDSEQTPEKPPSSSAPP-------SAPQ 456 slpqsepaasasssGtSssSss.SESsSgSDSEsESSSSDSEeeeeNEPp sl +ep+asa+ss S++S+s+S+S+S+SDSEsESSSSDSEe NEP+ ee04147 457 SL--PEPVASAHSS--SAESEStSDSDSSSDSESESSSSDSEE---NEPL 499 etasPEPEPPsTNKWQLDnWLnKVnphkvppagsnsseppesqqlppPii et++PEPEPP+TNKWQLDnWL+KV+++++pp+g++s+epp++++ ee04147 500 ETPAPEPEPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRHP------ 543 edveskgkveqntsqshpdskepplkSsskekrrPrtaqkapeskalKhK eskg+++++tsq+h++sk+pp+kSssk++r+P++a+++++ ee04147 544 ---ESKGSSDSATSQEHSESKDPPPKSSSKAPRAPPEAPHPGK------- 583 lsPaavavavraaqksPavPCaPAqseptpqrRTvGkKqPkKpeKasaee r++qksP Aq+ep pqr+TvG+KqPkKp+Kasa++ ee04147 584 ----------RSCQKSP------AQQEP-PQRQTVGTKQPKKPVKASARA 616 eprtslkpEseagtlpygssvqlpkdrpKvktkGrpraairkEpkpsvpp ++rtsl++E+e+g+lpygs++q++kd+pKvktkGrpraa+++Epkp+vpp ee04147 617 GSRTSLQGEREPGLLPYGSRDQTSKDKPKVKTKGRPRAAASNEPKPAVPP 666 atPqaavPrPkPPvPtPsEKkKykssskivpKSrefIEPatDsSssdSdt + sEKkK+kss+++++K+++++EPa+D+++++ ee04147 667 S----------------SEKKKHKSSLPAPSKALSGPEPAKDNVEDR--- 697 DsDLesepeeeaLqskslpPaiaSsGiqgqrtskskpksgsSlRtsvcrs +pe++aL +P+++S qg+ p+sgs++Rts+cr+ ee04147 698 ------TPEHFAL-----VPLTES---QGP------PHSGSGSRTSGCRQ 727 svrttndiaqedeekdrlllPlrdteLLSPLrDsdppksLwVKIDLdLLs +v ++qed++kdrl+lPlrdt+LLSPLrD++pp+sL+VKI+LdLLs ee04147 728 AV-----VVQEDSRKDRLPLPLRDTKLLSPLRDTPPPQSLMVKITLDLLS 772 RIPghLppgkgsrpaKaekKqvsakpkresekkasEkaspkgKRKhKpad RIP+ ppgkgsr++Kae+Kq++a++k++sek++s+++s+++K++++ + ee04147 773 RIPQ--PPGKGSRQRKAEDKQPPAGKKHSSEKRSSDSSSKLAKKRKG--E 818 derdieseKkqrlekdttirLlpktssssSsGPPHkepSstresssssan +erd+ ++Kk+rlek+ +++++ssssSs Hke+S+t++s++ss++ ee04147 819 AERDC-DNKKIRLEKE----IKSQSSSSSSS---HKESSKTKPSRPSSQS 860 skKelLPppagekeskspssqsPlrepakkrsrsekdtgssepdksasst skKe+LPpp+ +s+ssq+P++ pa+krsr+e+dt++++p+ksasst ee04147 861 SKKEMLPPPP-----VSSSSQKPAK-PALKRSRREADTCGQDPPKSASST 904 kssssskPKkteGKFCAtFKgIsvnegdepKkAasAtitvantAlAtAtv ks+++++ +I++++++e+K+ ee04147 905 KSNHKDS-------------SIPKQRRVEGKG------------------ 923 tAtAivtatvtasssehagsstdaansnsititltsGLmDssHlemtspf ++ssseh+gss+d+an pf ee04147 924 ----------SRSSSEHKGSSGDTAN----------------------PF 941 pvPslsngnakprRpKLkFDdsvqsADyyMqEAKKLKhKADalvdkfGKA pvPsl+ngn+kp++p++kFD+ q+AD++M+EAKK+K+KA++++d++GKA ee04147 942 PVPSLPNGNSKPGKPQVKFDK--QQADLHMREAKKMKQKAELMTDRVGKA 989 vnYleAvLSFIECGnAmEseplesKSPYYtmYSETVeLIrYaMrLKnfsd ++YleAvLSFIECG+A+Ese+++sKS+Y ++YSETV+LI+++M+LK+fsd ee04147 990 FKYLEAVLSFIECGIATESESQSSKSAY-SVYSETVDLIKFIMSLKSFSD 1038 ptAtaqDKkLAVLClRClSLLYlRMFrLKKDhAmKYSrtLtehFKqNsSk +tA++q+K++AVLC+RC+S+L+++MFr+KKD+A+KYSrtL++hF+ +sSk ee04147 1039 ATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLNKHFE-SSSK 1087 vAQAPSPwvagskstGtPSPvSPkpsPgsSVgsqssapssasasgvsgtV vAQAPSP++ ++stGtPSP+SP+psP+sSVgsqssa +s+++sgv++t+ ee04147 1088 VAQAPSPCI--ARSTGTPSPLSPMPSPASSVGSQSSA-GSVGSSGVAATI 1134 SiPqrIhqMAASyVtITSnvLtayelWeqAeaLtreNKEFFadLDtlmGP S+P++I++M++SyVtITS+vLta++lWeqAeaLtr+NKEFFa+L+t++++ ee04147 1135 STPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTRKNKEFFARLSTNVCT 1184 LtlnSSlvtdLVrYtRQGLhwLRqdAk<-* L+lnSSlv dLV+YtRQG+++L++++k ee04147 1185 LALNSSLV-DLVHYTRQGFQQLQELTK 1210 PF05110.3.ls: domain 1 of 1, from 9 to 1210: score 2608.8, E = 0 *->YeeDRNaLRirErERRNQEvqQeedaFpssfpLFgEPYKvAEvTnKG Y++DRN+LRirE+ERRNQE++Qe++aFp+++pLFgEPYK T+KG ee04147 9 YNDDRNLLRIREKERRNQEAHQEKEAFPEKIPLFGEPYK----TAKG 51 DeLSsRIQnmLGnYDEMKdFLsdrSnqkhLVGiepkpGkPqtPlnkdeks DeLSsRIQnmLGnY+E+K+FLs++S++++L+++e+++GkP++Pl++d++s ee04147 52 DELSSRIQNMLGNYEEVKEFLSTKSHTHRLDASENRLGKPKYPLIPDKGS 101 fvasssfftqvhhGsHQsihttavGpapvgniSrkpksaQpsthsStsls +++sssf+t+vhh Qsiht+a+Gp++vgniS++pk+aQp+t++++sl+ ee04147 102 SIPSSSFHTSVHH---QSIHTPASGPLSVGNISHNPKMAQPRTEPMPSLH 148 apSvvilnsslltqDrkSqsgwsrdsrgksphdaeqrksqsnkmqtvTds a+S+++++s++ltqDr++q+g+ g+s+h++++r+++++++++vTds ee04147 149 AKSCGPPDSQHLTQDRLGQEGF-----GSSHHKKGDRRADGDHCASVTDS 193 aperkLsplisylpspVPPLSpigsvqassprsqeeSkshssgedsfKei aper+Lsplis lpspVPPLSpi+s+q+++pr+q++Sk+h+s+++s K++ ee04147 194 APERELSPLIS-LPSPVPPLSPIHSNQQTLPRTQGSSKVHGSSNNS-KGY 241 craKSpkdlevkvqdperPhDgLvaasslkasSsqhsvQtFPPPsLpSKs c+aKSpkdl+vkv+d+e+P+D+Lva ++q+++QtFPPPsLpSKs ee04147 242 CPAKSPKDLAVKVHDKETPQDSLVA-------PAQPPSQTFPPPSLPSKS 284 samQQKPTAYVRPMDGQDQAPdESpeLKlssEFEdyvqqssfgsltdlKP +amQQKPTAYVRPMDGQDQAP+ESpeLK+++E dy+qq++ ++tdlK+ ee04147 285 VAMQQKPTAYVRPMDGQDQAPSESPELKPLPE--DYRQQTF--EKTDLKV 330 saasaKAKLtKlkIPsQsvEaslsndvSCVEEILkEMTHSWPPPLTAIHT + aKAKLtKlk+PsQsvE+++sn+v+CVEEILkEMTHSWPPPLTAIHT ee04147 331 P---AKAKLTKLKMPSQSVEQTYSNEVHCVEEILKEMTHSWPPPLTAIHT 377 PskaEPSkFPFPtKdSQhvspGtqnQKqyDtsskthsNgqqst.SMLEDD Ps+aEPSkFPFPtKdSQhvs++tqnQKqyDtsskthsN+qq+t+SMLEDD ee04147 378 PSTAEPSKFPFPTKDSQHVSSVTQNQKQYDTSSKTHSNSQQGTsSMLEDD 427 LKLSssEDDLEPvKtLttqCtAsdeeQaveKtkprsaPpsavlqqPnapq L+LS+sED sd+eQ++eK++++saPp +apq ee04147 428 LQLSDSED--------------SDSEQTPEKPPSSSAPP-------SAPQ 456 slpqsepaasasssGtSssSss.SESsSgSDSEsESSSSDSEeeeeNEPp sl +ep+asa+ss S++S+s+S+S+S+SDSEsESSSSDSEe NEP+ ee04147 457 SL--PEPVASAHSS--SAESEStSDSDSSSDSESESSSSDSEE---NEPL 499 etasPEPEPPsTNKWQLDnWLnKVnphkvppagsnsseppesqqlppPii et++PEPEPP+TNKWQLDnWL+KV+++++pp+g++s+epp++++ ee04147 500 ETPAPEPEPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRHP------ 543 edveskgkveqntsqshpdskepplkSsskekrrPrtaqkapeskalKhK eskg+++++tsq+h++sk+pp+kSssk++r+P++a+++++ ee04147 544 ---ESKGSSDSATSQEHSESKDPPPKSSSKAPRAPPEAPHPGK------- 583 lsPaavavavraaqksPavPCaPAqseptpqrRTvGkKqPkKpeKasaee r++qksP Aq+ep pqr+TvG+KqPkKp+Kasa++ ee04147 584 ----------RSCQKSP------AQQEP-PQRQTVGTKQPKKPVKASARA 616 eprtslkpEseagtlpygssvqlpkdrpKvktkGrpraairkEpkpsvpp ++rtsl++E+e+g+lpygs++q++kd+pKvktkGrpraa+++Epkp+vpp ee04147 617 GSRTSLQGEREPGLLPYGSRDQTSKDKPKVKTKGRPRAAASNEPKPAVPP 666 atPqaavPrPkPPvPtPsEKkKykssskivpKSrefIEPatDsSssdSdt + sEKkK+kss+++++K+++++EPa+D+++++ ee04147 667 S----------------SEKKKHKSSLPAPSKALSGPEPAKDNVEDR--- 697 DsDLesepeeeaLqskslpPaiaSsGiqgqrtskskpksgsSlRtsvcrs +pe++aL +P+++S qg+ p+sgs++Rts+cr+ ee04147 698 ------TPEHFAL-----VPLTES---QGP------PHSGSGSRTSGCRQ 727 svrttndiaqedeekdrlllPlrdteLLSPLrDsdppksLwVKIDLdLLs +v ++qed++kdrl+lPlrdt+LLSPLrD++pp+sL+VKI+LdLLs ee04147 728 AV-----VVQEDSRKDRLPLPLRDTKLLSPLRDTPPPQSLMVKITLDLLS 772 RIPghLppgkgsrpaKaekKqvsakpkresekkasEkaspkgKRKhKpad RIP+ ppgkgsr++Kae+Kq++a++k++sek++s+++s+++K++++ + ee04147 773 RIPQ--PPGKGSRQRKAEDKQPPAGKKHSSEKRSSDSSSKLAKKRKG--E 818 derdieseKkqrlekdttirLlpktssssSsGPPHkepSstresssssan +erd+ ++Kk+rlek+ +++++ssssSs Hke+S+t++s++ss++ ee04147 819 AERDC-DNKKIRLEKE----IKSQSSSSSSS---HKESSKTKPSRPSSQS 860 skKelLPppagekeskspssqsPlrepakkrsrsekdtgssepdksasst skKe+LPpp+ +s+ssq+P++ pa+krsr+e+dt++++p+ksasst ee04147 861 SKKEMLPPPP-----VSSSSQKPAK-PALKRSRREADTCGQDPPKSASST 904 kssssskPKkteGKFCAtFKgIsvnegdepKkAasAtitvantAlAtAtv ks+++++ +I++++++e+K+ ee04147 905 KSNHKDS-------------SIPKQRRVEGKG------------------ 923 tAtAivtatvtasssehagsstdaansnsititltsGLmDssHlemtspf ++ssseh+gss+d+an pf ee04147 924 ----------SRSSSEHKGSSGDTAN----------------------PF 941 pvPslsngnakprRpKLkFDdsvqsADyyMqEAKKLKhKADalvdkfGKA pvPsl+ngn+kp++p++kFD+ q+AD++M+EAKK+K+KA++++d++GKA ee04147 942 PVPSLPNGNSKPGKPQVKFDK--QQADLHMREAKKMKQKAELMTDRVGKA 989 vnYleAvLSFIECGnAmEseplesKSPYYtmYSETVeLIrYaMrLKnfsd ++YleAvLSFIECG+A+Ese+++sKS+Y ++YSETV+LI+++M+LK+fsd ee04147 990 FKYLEAVLSFIECGIATESESQSSKSAY-SVYSETVDLIKFIMSLKSFSD 1038 ptAtaqDKkLAVLClRClSLLYlRMFrLKKDhAmKYSrtLtehFKqNsSk +tA++q+K++AVLC+RC+S+L+++MFr+KKD+A+KYSrtL++hF+ +sSk ee04147 1039 ATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLNKHFE-SSSK 1087 vAQAPSPwvagskstGtPSPvSPkpsPgsSVgsqssapssasasgvsgtV vAQAPSP++ ++stGtPSP+SP+psP+sSVgsqssa +s+++sgv++t+ ee04147 1088 VAQAPSPCI--ARSTGTPSPLSPMPSPASSVGSQSSA-GSVGSSGVAATI 1134 SiPqrIhqMAASyVtITSnvLtayelWeqAeaLtreNKEFFadLDtlmGP S+P++I++M++SyVtITS+vLta++lWeqAeaLtr+NKEFFa+L+t++++ ee04147 1135 STPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTRKNKEFFARLSTNVCT 1184 LtlnSSlvtdLVrYtRQGLhwLRqdAk<-* L+lnSSlv dLV+YtRQG+++L++++k ee04147 1185 LALNSSLV-DLVHYTRQGFQQLQELTK 1210 //