hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-02580828/chunk_1/iprscan-20080808-02580828.nocrc
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Query sequence: ee06575
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01422.8.fs NF-X1 type zinc finger                         180.1    3.8e-65   7
PF01422.8.ls NF-X1 type zinc finger                         189.3    8.4e-54   6
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           20.6    6.4e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     382   413 ..    21    50 .]    20.6  6.4e-07
PF01422.8.fs   1/7     458   476 ..     1    23 []    26.5  4.7e-09
PF01422.8.ls   1/6     458   476 ..     1    23 []    28.4  2.4e-05
PF01422.8.ls   2/6     511   530 ..     1    23 []    28.9  1.7e-05
PF01422.8.fs   2/7     511   530 ..     1    23 []    27.0  3.2e-09
PF01422.8.ls   3/6     572   591 ..     1    23 []    31.4    3e-06
PF01422.8.fs   3/7     572   591 ..     1    23 []    29.5  3.9e-10
PF01422.8.ls   4/6     637   660 ..     1    23 []    41.0  3.7e-09
PF01422.8.fs   4/7     637   660 ..     1    23 []    39.1  1.2e-13
PF01422.8.ls   5/6     699   718 ..     1    23 []    24.6  0.00033
PF01422.8.fs   5/7     699   718 ..     1    23 []    22.7  1.1e-07
PF01422.8.ls   6/6     726   745 ..     1    23 []    35.1  2.2e-07
PF01422.8.fs   6/7     726   745 ..     1    23 []    33.2  1.6e-11

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 382 to 413: score 20.6, E = 6.4e-07
                   *->CgHsGslkyfCrsClerwlss.......sgnttCplC<-*
                      C H      f+  C+++w +s+ ++ ++   + Cp C   
     ee06575   382    CYHV-----FHLNCIKKWARSpasqadgQSGWRCPAC    413  

PF01422.8.fs: domain 1 of 7, from 458 to 476: score 26.5, E = 4.7e-09
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      C    H+C+ lCHp GpCppCp+   
     ee06575   458    CP---HSCNLLCHP-GPCPPCPA    476  

PF01422.8.ls: domain 1 of 6, from 458 to 476: score 28.4, E = 2.4e-05
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      C    H+C+ lCHp GpCppCp+   
     ee06575   458    CP---HSCNLLCHP-GPCPPCPA    476  

PF01422.8.ls: domain 2 of 6, from 511 to 530: score 28.9, E = 1.7e-05
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG  +H+C++lCH  G+C+pC+    
     ee06575   511    CG--QHQCAELCHG-GQCQPCQI    530  

PF01422.8.fs: domain 2 of 7, from 511 to 530: score 27.0, E = 3.2e-09
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG  +H+C++lCH  G+C+pC+    
     ee06575   511    CG--QHQCAELCHG-GQCQPCQI    530  

PF01422.8.ls: domain 3 of 6, from 572 to 591: score 31.4, E = 3e-06
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG  +H+C++ CHp +pC++Cp+   
     ee06575   572    CG--NHTCSQVCHP-QPCQQCPR    591  

PF01422.8.fs: domain 3 of 7, from 572 to 591: score 29.5, E = 3.9e-10
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG  +H+C++ CHp +pC++Cp+   
     ee06575   572    CG--NHTCSQVCHP-QPCQQCPR    591  

PF01422.8.ls: domain 4 of 6, from 637 to 660: score 41.0, E = 3.7e-09
                   *->CG.l.fkHkCqklCHpdGpCppCpq<-*
                      CG+l+f+H+C+klCH+ G+C+pC +   
     ee06575   637    CGsLdFIHTCEKLCHE-GDCGPCSR    660  

PF01422.8.fs: domain 4 of 7, from 637 to 660: score 39.1, E = 1.2e-13
                   *->CG.l.fkHkCqklCHpdGpCppCpq<-*
                      CG+l+f+H+C+klCH+ G+C+pC +   
     ee06575   637    CGsLdFIHTCEKLCHE-GDCGPCSR    660  

PF01422.8.ls: domain 5 of 6, from 699 to 718: score 24.6, E = 0.00033
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG  +HkC+++C+ d++++ Cp+   
     ee06575   699    CG--RHKCNEICCVDKEHK-CPL    718  

PF01422.8.fs: domain 5 of 7, from 699 to 718: score 22.7, E = 1.1e-07
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG  +HkC+++C+ d++++ Cp+   
     ee06575   699    CG--RHKCNEICCVDKEHK-CPL    718  

PF01422.8.ls: domain 6 of 6, from 726 to 745: score 35.1, E = 2.2e-07
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG   H+C+++CH+ G+C+ C+q   
     ee06575   726    CG--LHRCEEPCHR-GNCQTCWQ    745  

PF01422.8.fs: domain 6 of 7, from 726 to 745: score 33.2, E = 1.6e-11
                   *->CGlfkHkCqklCHpdGpCppCpq<-*
                      CG   H+C+++CH+ G+C+ C+q   
     ee06575   726    CG--LHRCEEPCHR-GNCQTCWQ    745  

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