hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-03041179/chunk_1/iprscan-20080808-03041179.nocrc
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Query sequence: ee06815
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00790.9.ls    VHS domain                              240.6    3.2e-69   1
PF00790.9.fs    VHS domain                              238.6    1.2e-68   1
PF02883.10.fs   Adaptin C-terminal domain               186.9      3e-56   1
PF03127.5.ls    GAT domain                              190.3    4.4e-54   1
PF02883.10.ls   Adaptin C-terminal domain               188.9    1.1e-53   1
PF03127.5.fs    GAT domain                              188.3    1.4e-53   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00790.9.fs      1/1      34   173 ..     1   153 []   238.6  1.2e-68
PF00790.9.ls      1/1      34   173 ..     1   153 []   240.6  3.2e-69
PF03127.5.ls      1/1     237   338 ..     1   106 []   190.3  4.4e-54
PF03127.5.fs      1/1     237   338 ..     1   106 []   188.3  1.4e-53
PF02883.10.fs     1/1     495   619 ..     1   125 []   186.9    3e-56
PF02883.10.ls     1/1     495   619 ..     1   125 []   188.9  1.1e-53

Alignments of top-scoring domains:
PF00790.9.fs: domain 1 of 1, from 34 to 173: score 238.6, E = 1.2e-68
                   *->ssfasplerliekATdeslreedlDwslildicDlInekiYqetgPk
                       ++a +le +++kATd+s+ e+  Dws i+++c+++n++   ++gP 
     ee06815    34    PGPAASLELWLNKATDPSMSEQ--DWSAIQNFCEQVNTD---PNGPT 75   

                   eAvrlIkKrinstknphvallALtlLdaCVKNCGskFHleiaskeFlneL
                   +A +l++++i+s +++++al+ALt+L++C+++CG+kFH e+a+++FlneL
     ee06815    76 HAPWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 124  

                   vkliprkppgrpakdkVkkkileliqeWadafCKhdknkpdlkyisdvyk
                   +k++++k++g +a++kVk +++e++++W+++f       p+  +i+d+y+
     ee06815   125 IKVLSPKYLGSWATGKVKGRVIEILFSWTVWF-------PEDIKIRDAYQ 167  

                   lLKrkG<-*
                   +LK++G   
     ee06815   168 MLKKQG    173  

PF00790.9.ls: domain 1 of 1, from 34 to 173: score 240.6, E = 3.2e-69
                   *->ssfasplerliekATdeslreedlDwslildicDlInekiYqetgPk
                       ++a +le +++kATd+s+ e+  Dws i+++c+++n++   ++gP 
     ee06815    34    PGPAASLELWLNKATDPSMSEQ--DWSAIQNFCEQVNTD---PNGPT 75   

                   eAvrlIkKrinstknphvallALtlLdaCVKNCGskFHleiaskeFlneL
                   +A +l++++i+s +++++al+ALt+L++C+++CG+kFH e+a+++FlneL
     ee06815    76 HAPWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 124  

                   vkliprkppgrpakdkVkkkileliqeWadafCKhdknkpdlkyisdvyk
                   +k++++k++g +a++kVk +++e++++W+++f       p+  +i+d+y+
     ee06815   125 IKVLSPKYLGSWATGKVKGRVIEILFSWTVWF-------PEDIKIRDAYQ 167  

                   lLKrkG<-*
                   +LK++G   
     ee06815   168 MLKKQG    173  

PF03127.5.ls: domain 1 of 1, from 237 to 338: score 190.3, E = 4.4e-54
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +++Ek+sK++s++EeVr++V++L+eMLs+y++++++p+d+E+Lq++y
     ee06815   237    EKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEALQVVY 283  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   erC+k++p++f+L+sdt+D+D   ++laeiLqaND L++++l+Yk++++g
     ee06815   284 ERCEKLRPTLFRLASDTTDDD---DALAEILQANDLLTQGVLLYKQVMEG 330  

                   rtrvlgaaa<-*
                   r+ ++g+++   
     ee06815   331 RV-TFGNRV    338  

PF03127.5.fs: domain 1 of 1, from 237 to 338: score 188.3, E = 1.4e-53
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +++Ek+sK++s++EeVr++V++L+eMLs+y++++++p+d+E+Lq++y
     ee06815   237    EKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEALQVVY 283  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   erC+k++p++f+L+sdt+D+D   ++laeiLqaND L++++l+Yk++++g
     ee06815   284 ERCEKLRPTLFRLASDTTDDD---DALAEILQANDLLTQGVLLYKQVMEG 330  

                   rtrvlgaaa<-*
                   r+ ++g+++   
     ee06815   331 RV-TFGNRV    338  

PF02883.10.fs: domain 1 of 1, from 495 to 619: score 186.9, E = 3e-56
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp++lp+++vy+++g++I l+f+++g p++p++ ++ lt++++++q
     ee06815   495    VKPSSLPPLIVYDRNGFRILLHFSQTGaPGHPEVQVLLLTMMSTAPQ 541  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+++++fq+AVPKs++++Lqp+s+s lpa++p+++P +i+Q+l + np+ 
     ee06815   542 PVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPaVISQMLLLDNPH- 590  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+p+rlr+klt+n+ggq++ e+gev  +P   
     ee06815   591 -KEPIRLRYKLTFNQGGQPFSEVGEVKDFP    619  

PF02883.10.ls: domain 1 of 1, from 495 to 619: score 188.9, E = 1.1e-53
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp++lp+++vy+++g++I l+f+++g p++p++ ++ lt++++++q
     ee06815   495    VKPSSLPPLIVYDRNGFRILLHFSQTGaPGHPEVQVLLLTMMSTAPQ 541  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+++++fq+AVPKs++++Lqp+s+s lpa++p+++P +i+Q+l + np+ 
     ee06815   542 PVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPaVISQMLLLDNPH- 590  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+p+rlr+klt+n+ggq++ e+gev  +P   
     ee06815   591 -KEPIRLRYKLTFNQGGQPFSEVGEVKDFP    619  

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