hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-03041179/chunk_1/iprscan-20080808-03041179.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ee06815
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00288                                                 217.4    1.3e-60   1
SM00809                                                 153.8    1.8e-41   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00288           1/1      40   173 ..     1   145 []   217.4  1.3e-60
SM00809           1/1     495   619 ..     1   124 []   153.8  1.8e-41

Alignments of top-scoring domains:
SM00288: domain 1 of 1, from 40 to 173: score 217.4, E = 1.3e-60
                   *->verliekATsesllaeeDWelileICDlinstqedgPkdAvralkKR
                      +e +++kAT++s+ + +DW+ i+++C+++n++ ++gP +A ++l+++
     ee06815    40    LELWLNKATDPSMSE-QDWSAIQNFCEQVNTD-PNGPTHAPWLLAHK 84   

                   lnsnknphVallALtLLdtcVkNCGskFhlevaskeFlnreLvkliksky
                   ++s +++++al+ALt+L++c+++CG+kFh+eva+++Fln eL+k++ +ky
     ee06815    85 IQS-PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN-ELIKVLSPKY 132  

                   hlkldkDaVkekileliqeWadafCrtgkndpdlslvvdvydlLkkkg<-
                    + +++++Vk +++e++++W+++f       p+  +++d+y++Lkk+g  
     ee06815   133 LGSWATGKVKGRVIEILFSWTVWF-------PEDIKIRDAYQMLKKQG   173  

                   *
                    
     ee06815     -   -    

SM00809: domain 1 of 1, from 495 to 619: score 153.8, E = 1.8e-41
                   *->pklssappivayeknglqIgfkfek.rrpgepdviritltftNksss
                       k+ss pp+++y+ ng++I ++f+++  pg+p+v ++ lt+ +++++
     ee06815   495    VKPSSLPPLIVYDRNGFRILLHFSQtGAPGHPEVQVLLLTMMSTAPQ 541  

                   pitnFsfqaAVPKsqkLqLqppssntlppggqggpPA.itQvlkvenpgk
                   p+ +++fq+AVPKs++++Lqp+ss+ lp++++  pPA i Q+l+++np+k
     ee06815   542 PVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAvISQMLLLDNPHK 591  

                   gkplrlrlrlsYtvggqsvqeqgdvlkfP<-*
                    +p+rlr++l+++ ggq+++e+g+v +fP   
     ee06815   592 -EPIRLRYKLTFNQGGQPFSEVGEVKDFP    619  

//