hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-03182761/chunk_1/iprscan-20080808-03182761.nocrc
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Query sequence: ee07548
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00307.21.ls Calponin homology (CH) domain             115.6    1.3e-31   1
PF00307.21.fs Calponin homology (CH) domain             113.7    4.9e-31   1
PF01494.9.fs  FAD binding domain                         31.7    1.6e-09   1
PF00412.12.fs LIM domain                                 30.5    3.3e-08   1
PF00412.12.ls LIM domain                                 32.5    7.8e-07   1
PF07992.4.fs  Pyridine nucleotide-disulphide oxidored    25.7    1.5e-06   1
PF01266.14.fs FAD dependent oxidoreductase               20.0    1.6e-05   1
PF00890.14.fs FAD binding domain                         13.9    0.00039   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF01494.9.fs    1/1      88   126 ..     1    39 [.    31.7  1.6e-09
PF07992.4.fs    1/1      90   119 ..     1    36 [.    25.7  1.5e-06
PF01266.14.fs   1/1      90   121 ..     1    32 [.    20.0  1.6e-05
PF00890.14.fs   1/1      92   119 ..     1    31 [.    13.9  0.00039
PF00307.21.fs   1/1     521   626 ..     1   122 []   113.7  4.9e-31
PF00307.21.ls   1/1     521   626 ..     1   122 []   115.6  1.3e-31
PF00412.12.ls   1/1     766   825 ..     1    61 []    32.5  7.8e-07
PF00412.12.fs   1/1     766   825 ..     1    61 []    30.5  3.3e-08

Alignments of top-scoring domains:
PF01494.9.fs: domain 1 of 1, from 88 to 126: score 31.7, E = 1.6e-09
                   *->etdVLIVGgGPaGLmlAllLaraGvrvvvvErhaetsvl<-*
                       t+ LI+G+GP+GL +A+ L++ G++vvv+E+++ +s++   
     ee07548    88    NTKCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRN    126  

PF07992.4.fs: domain 1 of 1, from 90 to 119: score 25.7, E = 1.5e-06
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   *->dvvIIGgGpAGlaAAirlaralgefglkvalitEEk<-*
                      +++IIG+Gp Gl++Ai l   l   g+kv++i  Ek   
     ee07548    90    KCLIIGAGPCGLRTAIDLSL-L---GAKVVVI--EK    119  

PF01266.14.fs: domain 1 of 1, from 90 to 121: score 20.0, E = 1.6e-05
                   *->DVvVIGGGivGlstAyhLakrGlsVtllErgd<-*
                      + ++IG+G  Gl tA +L+  G++V+++E++d   
     ee07548    90    KCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRD    121  

PF00890.14.fs: domain 1 of 1, from 92 to 119: score 13.9, E = 0.00039
                   *->DVvViGsGlAGLaAAleaAeaGlkkVavvek<-*
                        ++iG+G  GL+ A+ +   G+ kV+v+ek   
     ee07548    92    --LIIGAGPCGLRTAIDLSLLGA-KVVVIEK    119  

PF00307.21.fs: domain 1 of 1, from 521 to 626: score 113.7, E = 4.9e-31
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                       +   ll W+++++ gy g         v++t+++++w+ +GlaLca
     ee07548   521    ARSSKLLGWCQRQTDGYAG---------VNVTDLTMSWK-SGLALCA 557  

                   LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD
                   +++++rP+lid++   sl++++  +N +la+d+aeke lgi  +++++++
     ee07548   558 IIHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKE-LGI-SPIMTGKE 602  

                   ivegnpdPDeklvltllwqLirrfq<-*
                   ++++++ PD+++ +++l q++ +f+   
     ee07548   603 MASVGE-PDKLSMVMYLTQFYEMFK    626  

PF00307.21.ls: domain 1 of 1, from 521 to 626: score 115.6, E = 1.3e-31
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                       +   ll W+++++ gy g         v++t+++++w+ +GlaLca
     ee07548   521    ARSSKLLGWCQRQTDGYAG---------VNVTDLTMSWK-SGLALCA 557  

                   LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD
                   +++++rP+lid++   sl++++  +N +la+d+aeke lgi  +++++++
     ee07548   558 IIHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKE-LGI-SPIMTGKE 602  

                   ivegnpdPDeklvltllwqLirrfq<-*
                   ++++++ PD+++ +++l q++ +f+   
     ee07548   603 MASVGE-PDKLSMVMYLTQFYEMFK    626  

PF00412.12.ls: domain 1 of 1, from 766 to 825: score 32.5, E = 7.8e-07
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+k++y  e++  A +k +H++CF+C  C ++L  + + + +++
     ee07548   766    CYFCQKRVYVMERL-SAEGKFFHRSCFKCEYCATTLRLSAYAYDIED 811  

                   sklYCkhDyyklfg<-*
                   +k+YCk++y+ + +   
     ee07548   812 GKFYCKPHYCYRLS    825  

PF00412.12.fs: domain 1 of 1, from 766 to 825: score 30.5, E = 3.3e-08
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+k++y  e++  A +k +H++CF+C  C ++L  + + + +++
     ee07548   766    CYFCQKRVYVMERL-SAEGKFFHRSCFKCEYCATTLRLSAYAYDIED 811  

                   sklYCkhDyyklfg<-*
                   +k+YCk++y+ + +   
     ee07548   812 GKFYCKPHYCYRLS    825  

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