hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-03325627/chunk_1/iprscan-20080808-03325627.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee09278 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 416.8 2.7e-122 14 PF00096.16.fs Zinc finger, C2H2 type 389.3 5.4e-114 14 PF02023.7.ls SCAN domain 189.0 1e-53 1 PF02023.7.fs SCAN domain 186.8 5e-53 1 PF01352.17.fs KRAB box 92.4 1.2e-25 1 PF01352.17.ls KRAB box 94.4 3.1e-25 1 PF01096.9.fs Transcription factor S-II (TFIIS) 49.1 1.7e-14 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.ls 1/1 52 147 .. 1 96 [] 189.0 1e-53 PF02023.7.fs 1/1 52 142 .. 1 91 [. 186.8 5e-53 PF01352.17.fs 1/1 237 277 .. 1 41 [] 92.4 1.2e-25 PF01352.17.ls 1/1 237 277 .. 1 41 [] 94.4 3.1e-25 PF00096.16.ls 1/14 488 510 .. 1 24 [] 33.8 5.7e-07 PF00096.16.fs 1/14 488 510 .. 1 24 [] 31.8 1.1e-06 PF00096.16.ls 2/14 516 538 .. 1 24 [] 25.4 0.00018 PF00096.16.fs 2/14 516 538 .. 1 24 [] 23.5 0.00013 PF00096.16.fs 3/14 544 566 .. 1 24 [] 26.0 3.1e-05 PF00096.16.ls 3/14 544 566 .. 1 24 [] 28.0 3.2e-05 PF00096.16.ls 5/14 628 650 .. 1 24 [] 33.4 7.2e-07 PF00096.16.fs 5/14 628 650 .. 1 24 [] 31.4 1.4e-06 PF00096.16.ls 6/14 684 706 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 6/14 684 706 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 7/14 712 734 .. 1 24 [] 30.5 5.3e-06 PF00096.16.fs 7/14 712 734 .. 1 24 [] 28.6 7.2e-06 PF00096.16.ls 8/14 765 787 .. 1 24 [] 31.4 3e-06 PF00096.16.fs 8/14 765 787 .. 1 24 [] 29.4 4.4e-06 PF00096.16.ls 9/14 793 815 .. 1 24 [] 37.3 5e-08 PF00096.16.fs 9/14 793 815 .. 1 24 [] 35.3 1.5e-07 PF00096.16.ls 10/14 843 865 .. 1 24 [] 23.3 0.0008 PF00096.16.ls 11/14 871 893 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 11/14 871 893 .. 1 24 [] 29.6 4.1e-06 PF00096.16.fs 12/14 899 921 .. 1 24 [] 25.7 3.6e-05 PF00096.16.ls 12/14 899 921 .. 1 24 [] 27.7 3.8e-05 PF00096.16.ls 13/14 981 1003 .. 1 24 [] 31.3 3.2e-06 PF00096.16.fs 13/14 981 1003 .. 1 24 [] 29.3 4.7e-06 PF00096.16.ls 14/14 1009 1031 .. 1 24 [] 38.4 2.2e-08 PF00096.16.fs 14/14 1009 1031 .. 1 24 [] 36.5 7.8e-08 Alignments of top-scoring domains: PF02023.7.ls: domain 1 of 1, from 52 to 147: score 189.0, E = 1e-53 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL p++E+fRq FRq+rY+e+sGP E LsrLReLC+ WLrP+v +K+QIL ee09278 52 PGQELFRQLFRQLRYHESSGPLETLSRLRELCRWWLRPDVLSKAQIL 98 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFL+ILP+El+ wVq h PeSgEEaV+LlE+L+r+lD+ ee09278 99 ELLVLEQFLSILPGELRVWVQLHNPESGEEAVALLEELQRDLDGTSWRD 147 -* ee09278 - - PF02023.7.fs: domain 1 of 1, from 52 to 142: score 186.8, E = 5e-53 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL p++E+fRq FRq+rY+e+sGP E LsrLReLC+ WLrP+v +K+QIL ee09278 52 PGQELFRQLFRQLRYHESSGPLETLSRLRELCRWWLRPDVLSKAQIL 98 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDe<-* ELLVLEQFL+ILP+El+ wVq h PeSgEEaV+LlE+L+r+lD+ ee09278 99 ELLVLEQFLSILPGELRVWVQLHNPESGEEAVALLEELQRDLDG 142 PF01352.17.fs: domain 1 of 1, from 237 to 277: score 92.4, E = 1.2e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DV V F+q+EW++Ld+aQrnLYrdVMlENy+n++Sl ee09278 237 MTFKDVEVTFSQDEWGWLDSAQRNLYRDVMLENYRNMASLV 277 PF01352.17.ls: domain 1 of 1, from 237 to 277: score 94.4, E = 3.1e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DV V F+q+EW++Ld+aQrnLYrdVMlENy+n++Sl ee09278 237 MTFKDVEVTFSQDEWGWLDSAQRNLYRDVMLENYRNMASLV 277 PF00096.16.ls: domain 1 of 14, from 488 to 510: score 33.8, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dCg++Fs++s+L H+r H ee09278 488 FKCS-DCGRTFSHSSHLAYHQRLH 510 PF00096.16.fs: domain 1 of 14, from 488 to 510: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dCg++Fs++s+L H+r H ee09278 488 FKCS-DCGRTFSHSSHLAYHQRLH 510 PF00096.16.ls: domain 2 of 14, from 516 to 538: score 25.4, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+F+ +sn rH ++H ee09278 516 FKCR-VCGKAFRWSSNCARHEKIH 538 PF00096.16.fs: domain 2 of 14, from 516 to 538: score 23.5, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+F+ +sn rH ++H ee09278 516 FKCR-VCGKAFRWSSNCARHEKIH 538 PF00096.16.fs: domain 3 of 14, from 544 to 566: score 26.0, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+F+r s ++ H+ tH ee09278 544 YKCD-LCEKAFRRLSAYRLHRETH 566 PF00096.16.ls: domain 3 of 14, from 544 to 566: score 28.0, E = 3.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+F+r s ++ H+ tH ee09278 544 YKCD-LCEKAFRRLSAYRLHRETH 566 PF00096.16.ls: domain 5 of 14, from 628 to 650: score 33.4, E = 7.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+ +sn++rH+r H ee09278 628 YKCT-KCRKTFRWRSNFTRHMRLH 650 PF00096.16.fs: domain 5 of 14, from 628 to 650: score 31.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+ +sn++rH+r H ee09278 628 YKCT-KCRKTFRWRSNFTRHMRLH 650 PF00096.16.ls: domain 6 of 14, from 684 to 706: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+rk++L H+r+H ee09278 684 FLCQ-QCGKTFTRKKTLVDHQRIH 706 PF00096.16.fs: domain 6 of 14, from 684 to 706: score 30.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+rk++L H+r+H ee09278 684 FLCQ-QCGKTFTRKKTLVDHQRIH 706 PF00096.16.ls: domain 7 of 14, from 712 to 734: score 30.5, E = 5.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk F +s + H+++H ee09278 712 YQCS-DCGKDFAYRSAFIVHKKKH 734 PF00096.16.fs: domain 7 of 14, from 712 to 734: score 28.6, E = 7.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk F +s + H+++H ee09278 712 YQCS-DCGKDFAYRSAFIVHKKKH 734 PF00096.16.ls: domain 8 of 14, from 765 to 787: score 31.4, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L H+r+H ee09278 765 YKCS-QCGKAFRNHSFLLIHQRVH 787 PF00096.16.fs: domain 8 of 14, from 765 to 787: score 29.4, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L H+r+H ee09278 765 YKCS-QCGKAFRNHSFLLIHQRVH 787 PF00096.16.ls: domain 9 of 14, from 793 to 815: score 37.3, E = 5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+ +snL rH+r+H ee09278 793 YKCR-ECGKAFRWSSNLYRHQRIH 815 PF00096.16.fs: domain 9 of 14, from 793 to 815: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+ +snL rH+r+H ee09278 793 YKCR-ECGKAFRWSSNLYRHQRIH 815 PF00096.16.ls: domain 10 of 14, from 843 to 865: score 23.3, E = 0.0008 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+rk +L H+ +H ee09278 843 FWCQ-ECGKTFTRKRTLLDHKGIH 865 PF00096.16.ls: domain 11 of 14, from 871 to 893: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cgks+ r++ L +H+r+H ee09278 871 YKCN-LCGKSYDRNYRLVNHQRIH 893 PF00096.16.fs: domain 11 of 14, from 871 to 893: score 29.6, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cgks+ r++ L +H+r+H ee09278 871 YKCN-LCGKSYDRNYRLVNHQRIH 893 PF00096.16.fs: domain 12 of 14, from 899 to 921: score 25.7, E = 3.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ Cgk F +++L +H+r+H ee09278 899 FKCQ-WCGKEFIGRHTLSSHQRKH 921 PF00096.16.ls: domain 12 of 14, from 899 to 921: score 27.7, E = 3.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ Cgk F +++L +H+r+H ee09278 899 FKCQ-WCGKEFIGRHTLSSHQRKH 921 PF00096.16.ls: domain 13 of 14, from 981 to 1003: score 31.3, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+ +s+L +H+r H ee09278 981 HKCS-ICGKTFNKSSQLISHKRFH 1003 PF00096.16.fs: domain 13 of 14, from 981 to 1003: score 29.3, E = 4.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+ +s+L +H+r H ee09278 981 HKCS-ICGKTFNKSSQLISHKRFH 1003 PF00096.16.ls: domain 14 of 14, from 1009 to 1031: score 38.4, E = 2.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+ +snL rH++ H ee09278 1009 FKCS-KCGKTFRWSSNLARHMKNH 1031 PF00096.16.fs: domain 14 of 14, from 1009 to 1031: score 36.5, E = 7.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+ +snL rH++ H ee09278 1009 FKCS-KCGKTFRWSSNLARHMKNH 1031 //