hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-03325627/chunk_1/iprscan-20080808-03325627.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee09278 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 374.1 8.4e-108 14 SM00431 227.5 1.1e-63 1 SM00349 128.9 5.4e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00431 1/1 54 166 .. 1 113 [] 227.5 1.1e-63 SM00349 1/1 237 296 .. 1 62 [] 128.9 5.4e-34 SM00355 1/14 488 510 .. 1 23 [] 26.0 0.005 SM00355 2/14 516 538 .. 1 23 [] 25.1 0.01 SM00355 3/14 544 566 .. 1 23 [] 25.2 0.0093 SM00355 4/14 600 622 .. 1 23 [] 17.7 1.7 SM00355 5/14 628 650 .. 1 23 [] 31.3 0.00014 SM00355 6/14 684 706 .. 1 23 [] 28.3 0.0011 SM00355 7/14 712 734 .. 1 23 [] 27.4 0.002 SM00355 8/14 765 787 .. 1 23 [] 29.0 0.00064 SM00355 9/14 793 815 .. 1 23 [] 30.5 0.00024 SM00355 10/14 843 865 .. 1 23 [] 19.6 0.44 SM00355 11/14 871 893 .. 1 23 [] 27.3 0.0022 SM00355 12/14 899 921 .. 1 23 [] 27.2 0.0022 SM00355 13/14 981 1003 .. 1 23 [] 26.6 0.0035 SM00355 14/14 1009 1031 .. 1 23 [] 33.1 3.7e-05 Alignments of top-scoring domains: SM00431: domain 1 of 1, from 54 to 166: score 227.5, E = 1.1e-63 *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL +E+fRq+FRq+rY+E+sGP E+LSRLRELCr+WLRP++ +K+QILEL ee09278 54 QELFRQLFRQLRYHESSGPLETLSRLRELCRWWLRPDVLSKAQILEL 100 LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah LVLEQFL+ILPgEL++WV+ h+PeSGEEAV+LlE+L+r+Ld+ + ++ ee09278 101 LVLEQFLSILPGELRVWVQLHNPESGEEAVALLEELQRDLDGTSWRDPGP 150 vhgqevLleemvplga<-* ++ +v + + l+ ee09278 151 AQSPDVHWMGTGALRS 166 SM00349: domain 1 of 1, from 237 to 296: score 128.9, E = 5.4e-34 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DV V+Fsq+EW++LD+aQrnLYRdVMlENY+n++SL +++k ee09278 237 MTFKDVEVTFSQDEWGWLDSAQRNLYRDVMLENYRNMASLV-GPFTK 282 pdliskLEqgeEpwi<-* p lis+LE + Epw ee09278 283 PALISWLEAR-EPWG 296 SM00355: domain 1 of 14, from 488 to 510: score 26.0, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ Cg++fs+ ++L H+r H ee09278 488 FKCSD-CGRTFSHSsHLAYHQRLH 510 SM00355: domain 2 of 14, from 516 to 538: score 25.1, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgk f++ ++ rH ++H ee09278 516 FKCRV-CGKAFRWSsNCARHEKIH 538 SM00355: domain 3 of 14, from 544 to 566: score 25.2, E = 0.0093 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k f++ +a++ H +H ee09278 544 YKCDL-CEKAFRRLsAYRLHRETH 566 SM00355: domain 4 of 14, from 600 to 622: score 17.7, E = 1.7 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C ksf+ k+ +H+r+H ee09278 600 FDCSQ-CRKSFHCKsYVLEHQRIH 622 SM00355: domain 5 of 14, from 628 to 650: score 31.3, E = 0.00014 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k+f+++++++rHmr H ee09278 628 YKCTK-CRKTFRWRsNFTRHMRLH 650 SM00355: domain 6 of 14, from 684 to 706: score 28.3, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk+f++k+ L+ H+r+H ee09278 684 FLCQQ-CGKTFTRKkTLVDHQRIH 706 SM00355: domain 7 of 14, from 712 to 734: score 27.4, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f ++a++ H ++H ee09278 712 YQCSD-CGKDFAYRsAFIVHKKKH 734 SM00355: domain 8 of 14, from 765 to 787: score 29.0, E = 0.00064 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++++ L H+rvH ee09278 765 YKCSQ-CGKAFRNHsFLLIHQRVH 787 SM00355: domain 9 of 14, from 793 to 815: score 30.5, E = 0.00024 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk f++ ++L rH+r+H ee09278 793 YKCRE-CGKAFRWSsNLYRHQRIH 815 SM00355: domain 10 of 14, from 843 to 865: score 19.6, E = 0.44 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk+f++k+ L H +H ee09278 843 FWCQE-CGKTFTRKrTLLDHKGIH 865 SM00355: domain 11 of 14, from 871 to 893: score 27.3, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgks+ + L++H+r+H ee09278 871 YKCNL-CGKSYDRNyRLVNHQRIH 893 SM00355: domain 12 of 14, from 899 to 921: score 27.2, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f ++ L H+r+H ee09278 899 FKCQW-CGKEFIGRhTLSSHQRKH 921 SM00355: domain 13 of 14, from 981 to 1003: score 26.6, E = 0.0035 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+i Cgk+f+ ++L+ H r H ee09278 981 HKCSI-CGKTFNKSsQLISHKRFH 1003 SM00355: domain 14 of 14, from 1009 to 1031: score 33.1, E = 3.7e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk+f++ ++L rHm+ H ee09278 1009 FKCSK-CGKTFRWSsNLARHMKNH 1031 //