hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-03452662/chunk_1/iprscan-20080808-03452662.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee11614 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08367.1.fs Peptidase M16C associated 374.3 2.2e-115 1 PF08367.1.ls Peptidase M16C associated 376.3 4.4e-110 1 PF05193.11.ls Peptidase M16 inactive domain 220.3 3.9e-63 2 PF05193.11.fs Peptidase M16 inactive domain 216.5 5.7e-62 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05193.11.ls 1/2 242 430 .. 1 198 [] 142.1 1.4e-39 PF05193.11.fs 1/2 242 430 .. 1 198 [] 140.1 4.2e-39 PF08367.1.fs 1/1 502 750 .. 1 253 [] 374.3 2.2e-115 PF08367.1.ls 1/1 502 750 .. 1 253 [] 376.3 4.4e-110 PF05193.11.fs 2/2 758 957 .. 1 198 [] 76.3 4e-21 PF05193.11.ls 2/2 758 957 .. 1 198 [] 78.2 2.3e-20 Alignments of top-scoring domains: PF05193.11.ls: domain 1 of 2, from 242 to 430: score 142.1, E = 1.4e-39 *->sltredLkdFykkhYspdnmvlvvvGdvdhdellalae.kyfgdlpa lt e+Lk+F+++hY+p+n+ ++ +G++++++ l+++ +++++++++ ee11614 242 ELTWEQLKQFHATHYHPSNARFFTYGNFPLEQHLKQIHeEALSKFQK 288 skeknlvpplvmAkgkpr.pplepakl.g.evvvp.kdvpqahlalafpg +++++vp + p+++p+e++ + g++ + ++ +q+ ++++f++ ee11614 289 IEPSTVVP-----AQTPWdKPREFQITcGpDSFATdPS-KQTTVSVSFLL 332 pplsddpdsaaldvLnelLggggggmsSrLfqelrekegLpaysvsafld p+++d+ ++++l++L++lL +g ++S+++++l ++gL ++++s ++ ee11614 333 PDITDTFEAFTLSLLSSLLTSG---PNSPFYKALI-ESGL-GTDFSPDVG 377 sysynd.ddtGlfgiya.tdpegenleeRvlelileeleklaeeGiteee yn + +f++++++ e +++e v li++++++++e+G+ ++ ee11614 378 ---YNGyTREAYFSVGLqGIVE-KDIET-VRSLIDRTIDEVVEKGFEDDR 422 leraknql<-* +e++ +++ ee11614 423 IEALLHKI 430 PF05193.11.fs: domain 1 of 2, from 242 to 430: score 140.1, E = 4.2e-39 *->sltredLkdFykkhYspdnmvlvvvGdvdhdellalae.kyfgdlpa lt e+Lk+F+++hY+p+n+ ++ +G++++++ l+++ +++++++++ ee11614 242 ELTWEQLKQFHATHYHPSNARFFTYGNFPLEQHLKQIHeEALSKFQK 288 skeknlvpplvmAkgkpr.pplepakl.g.evvvp.kdvpqahlalafpg +++++vp + p+++p+e++ + g++ + ++ +q+ ++++f++ ee11614 289 IEPSTVVP-----AQTPWdKPREFQITcGpDSFATdPS-KQTTVSVSFLL 332 pplsddpdsaaldvLnelLggggggmsSrLfqelrekegLpaysvsafld p+++d+ ++++l++L++lL +g ++S+++++l ++gL ++++s ++ ee11614 333 PDITDTFEAFTLSLLSSLLTSG---PNSPFYKALI-ESGL-GTDFSPDVG 377 sysynd.ddtGlfgiya.tdpegenleeRvlelileeleklaeeGiteee yn + +f++++++ e +++e v li++++++++e+G+ ++ ee11614 378 ---YNGyTREAYFSVGLqGIVE-KDIET-VRSLIDRTIDEVVEKGFEDDR 422 leraknql<-* +e++ +++ ee11614 423 IEALLHKI 430 PF08367.1.fs: domain 1 of 1, from 502 to 750: score 374.3, E = 2.2e-115 *->msPdedlekkeeeeErekLekkkssLsEeDkeeIiergleLeelQst m Pd + +k+++ E +kL++k+++Ls+ D+++I+e+gleL++ Qs ee11614 502 MRPDDKYHEKQAQVEATKLKQKVEALSPGDRQQIYEKGLELRSQQSK 548 peSeEdLscLPtLtlsDIpksideypleee.dvgdvkVlhhdvdTNGIvY p+ d scLP+L++sDI++ i+ ++l++ +gd++V+++ ++TNG+vY ee11614 549 PQ---DASCLPALKVSDIEPTIPVTELDVVlTAGDIPVQYCAQPTNGMVY 595 vrlvfdlndaLPeellPyLPLfcsvltklGTenysYreleeeIklkTGGI +r++++ln LPeel Py+PLfcsvltklG++ ++Yre++++I+lkTGG+ ee11614 596 FRAFSSLN-TLPEELRPYVPLFCSVLTKLGCGLLDYREQAQQIELKTGGM 644 sfsvsvssnpddtdeyelsfaisGkALnskvpklFeLiseilnetdFdde s+s++v ++ + +d+ye+++ +s+ +L++++p++++L+sei+n++ F e ee11614 645 SASPHVLPDDSHMDTYEQGVLFSSLCLDRNLPDMMQLWSEIFNNPCFEEE 694 eeRLkeLiresasrlensiadSGHsyAasraasylSiagaisEqlgGleq e +k+L+++ a++l n+i dSGH yA++ra++ l++ag+++E+++G++q ee11614 695 E-HFKVLVKMTAQELANGIPDSGHLYASIRAGRTLTPAGDLQETFSGMDQ 743 vkfikeL<-* v+++k++ ee11614 744 VRLMKRI 750 PF08367.1.ls: domain 1 of 1, from 502 to 750: score 376.3, E = 4.4e-110 *->msPdedlekkeeeeErekLekkkssLsEeDkeeIiergleLeelQst m Pd + +k+++ E +kL++k+++Ls+ D+++I+e+gleL++ Qs ee11614 502 MRPDDKYHEKQAQVEATKLKQKVEALSPGDRQQIYEKGLELRSQQSK 548 peSeEdLscLPtLtlsDIpksideypleee.dvgdvkVlhhdvdTNGIvY p+ d scLP+L++sDI++ i+ ++l++ +gd++V+++ ++TNG+vY ee11614 549 PQ---DASCLPALKVSDIEPTIPVTELDVVlTAGDIPVQYCAQPTNGMVY 595 vrlvfdlndaLPeellPyLPLfcsvltklGTenysYreleeeIklkTGGI +r++++ln LPeel Py+PLfcsvltklG++ ++Yre++++I+lkTGG+ ee11614 596 FRAFSSLN-TLPEELRPYVPLFCSVLTKLGCGLLDYREQAQQIELKTGGM 644 sfsvsvssnpddtdeyelsfaisGkALnskvpklFeLiseilnetdFdde s+s++v ++ + +d+ye+++ +s+ +L++++p++++L+sei+n++ F e ee11614 645 SASPHVLPDDSHMDTYEQGVLFSSLCLDRNLPDMMQLWSEIFNNPCFEEE 694 eeRLkeLiresasrlensiadSGHsyAasraasylSiagaisEqlgGleq e +k+L+++ a++l n+i dSGH yA++ra++ l++ag+++E+++G++q ee11614 695 E-HFKVLVKMTAQELANGIPDSGHLYASIRAGRTLTPAGDLQETFSGMDQ 743 vkfikeL<-* v+++k++ ee11614 744 VRLMKRI 750 PF05193.11.fs: domain 2 of 2, from 758 to 957: score 76.3, E = 4e-21 *->sltredLkdFykkhYspdnmvlvvvGdvdhd..ellalaekyfgdlp + + +L k +++dnm ++v + + ++ ++ +e+++ ++ ee11614 758 PI-LRKLPRIKKHLLNGDNMRCSVNA-TPQQmpQTEKAVEDFLRSIG 802 askeknl.vppl.v...mA..............kgkpr.pplepakl.g. +sk++ ++v+p++v+++++++++++ + +++++ + + +++ + + + ee11614 803 RSKKERRpVRPHtVekpVPsssggdahvphgsqVIRKLvMEPTFKPWqMk 852 evvvp.kdvpqahlalafpgpplsddpdsaaldvLnelLggggggmsSrL ++++++ + ++++ + +++p+ +dpd+a l++L++l+ L ee11614 853 THFLMpFP--VNYVGECIRTVPY-TDPDHASLKILARLMTAK------FL 893 fqelrekegLpaysvsafldsysyndddtGlfgiya.tdpegenleeRvl ++e+r ++g+ ay+ +a l+ + G+f++y+ +dp+ e +l ee11614 894 HTEIR-EKGG-AYGGGAKLS-------HNGIFTLYSyRDPN---TIE-TL 930 elileeleklaeeGiteeeleraknql<-* +++ +++++ +++++t++++++ak + ee11614 931 QSFGKAVDWAKSGKFTQQDIDEAKLSV 957 PF05193.11.ls: domain 2 of 2, from 758 to 957: score 78.2, E = 2.3e-20 *->sltredLkdFykkhYspdnmvlvvvGdvdhd..ellalaekyfgdlp + + +L k +++dnm ++v + + ++ ++ +e+++ ++ ee11614 758 PI-LRKLPRIKKHLLNGDNMRCSVNA-TPQQmpQTEKAVEDFLRSIG 802 askeknl.vppl.v...mA..............kgkpr.pplepakl.g. +sk++ ++v+p++v+++++++++++ + +++++ + + +++ + + + ee11614 803 RSKKERRpVRPHtVekpVPsssggdahvphgsqVIRKLvMEPTFKPWqMk 852 evvvp.kdvpqahlalafpgpplsddpdsaaldvLnelLggggggmsSrL ++++++ + ++++ + +++p+ +dpd+a l++L++l+ L ee11614 853 THFLMpFP--VNYVGECIRTVPY-TDPDHASLKILARLMTAK------FL 893 fqelrekegLpaysvsafldsysyndddtGlfgiya.tdpegenleeRvl ++e+r ++g+ ay+ +a l+ + G+f++y+ +dp+ e +l ee11614 894 HTEIR-EKGG-AYGGGAKLS-------HNGIFTLYSyRDPN---TIE-TL 930 elileeleklaeeGiteeeleraknql<-* +++ +++++ +++++t++++++ak + ee11614 931 QSFGKAVDWAKSGKFTQQDIDEAKLSV 957 //