hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-03431029/chunk_1/iprscan-20090618-03431029.nocrc
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Query sequence: ee13635
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04516.5.ls CP2 transcription factor                       539.4   3.5e-159   1
PF04516.5.fs CP2 transcription factor                       537.4   1.4e-158   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04516.5.fs   1/1      57   284 ..     1   239 []   537.4 1.4e-158
PF04516.5.ls   1/1      57   284 ..     1   239 []   539.4 3.5e-159

Alignments of top-scoring domains:
PF04516.5.fs: domain 1 of 1, from 57 to 284: score 537.4, E = 1.4e-158
                   *->sykdstqerdvldaatpilkdeeelqipeiydslspndFqYvLeApk
                      +y+    ++dvl  a+pi+k+ee++++p++++++ p  FqYvL+A++
     ee13635    57    AYS----MSDVL--ALPIFKQEESSLPPDNENKILP--FQYVLCAAT 95   

                   SlavKlgDetmTYLNKGQFYeItLeetpdlGegkdlkskkVKSvvMVVFr
                   S+avKl+Det+TYLN+GQ+YeI+++++++lGe++++++k VKS+++VVF+
     ee13635    96 SPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFH 145  

                   edKlqeeelkqWkyWHsrQhtaKQRiLDIddkksvGiigpnIeEiayNAv
                   +++lq++e++q+++W+++++  ++RiLDId+++svGii+p+++++++N+v
     ee13635   146 DRRLQYTEHQQLEGWRWNRP--GDRILDIDIPMSVGIIDPRANPTQLNTV 193  

                   sFlWdpneeSAkvFIqVnCLSTDFSsQKHGGVKGlPLrvQIDTydynndG
                   +FlWdp+++ ++vFIqV+C+ST+F+++KHGG+KG+P+rvQIDT+++n++G
     ee13635   194 EFLWDPAKR-TSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENG 242  

                   eyteplHRAyCQIKVFCDKGAERKqKtRDEerkqrkrKvkek<-*
                   eyte+lH+A+CQIKVF++KGA+RKqKt++E++++r++++kek   
     ee13635   243 EYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTPHEKEK    284  

PF04516.5.ls: domain 1 of 1, from 57 to 284: score 539.4, E = 3.5e-159
                   *->sykdstqerdvldaatpilkdeeelqipeiydslspndFqYvLeApk
                      +y+    ++dvl  a+pi+k+ee++++p++++++ p  FqYvL+A++
     ee13635    57    AYS----MSDVL--ALPIFKQEESSLPPDNENKILP--FQYVLCAAT 95   

                   SlavKlgDetmTYLNKGQFYeItLeetpdlGegkdlkskkVKSvvMVVFr
                   S+avKl+Det+TYLN+GQ+YeI+++++++lGe++++++k VKS+++VVF+
     ee13635    96 SPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFH 145  

                   edKlqeeelkqWkyWHsrQhtaKQRiLDIddkksvGiigpnIeEiayNAv
                   +++lq++e++q+++W+++++  ++RiLDId+++svGii+p+++++++N+v
     ee13635   146 DRRLQYTEHQQLEGWRWNRP--GDRILDIDIPMSVGIIDPRANPTQLNTV 193  

                   sFlWdpneeSAkvFIqVnCLSTDFSsQKHGGVKGlPLrvQIDTydynndG
                   +FlWdp+++ ++vFIqV+C+ST+F+++KHGG+KG+P+rvQIDT+++n++G
     ee13635   194 EFLWDPAKR-TSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENG 242  

                   eyteplHRAyCQIKVFCDKGAERKqKtRDEerkqrkrKvkek<-*
                   eyte+lH+A+CQIKVF++KGA+RKqKt++E++++r++++kek   
     ee13635   243 EYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTPHEKEK    284  

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