hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-03564621/chunk_1/iprscan-20080808-03564621.nocrc
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Query sequence: ee13770
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08172.3.ls CASP C terminal                                436.6   3.1e-128   1
PF08172.3.fs CASP C terminal                                434.8   1.1e-127   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08172.3.fs   1/1     420   646 ..     1   258 []   434.8 1.1e-127
PF08172.3.ls   1/1     420   646 ..     1   258 []   436.6 3.1e-128

Alignments of top-scoring domains:
PF08172.3.fs: domain 1 of 1, from 420 to 646: score 434.8, E = 1.1e-127
                   *->neelqkelteLkqKlseqeeLiaKLEaDLakVedvgspfnegasmms
                      ++elq  +te+++++ eq eLia+LE+DL+ ++++++p++ega++  
     ee13770   420    CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHR 466  

                   gaTRqitnriseatgklsPtSsIikGiPeegelsglsrNsvnETqsSiLp
                   +  ++i+++i+eat++++++    +G  +eg+            ++S+L+
     ee13770   467 L--EKIPEPIKEATALFYGPAAPASGALPEGQ------------VDSLLS 502  

                   IItsQRDRFRsRnteLEeqirqlnqkigkLqsElesLraDNiKLYEkIRf
                   II+sQR+RFR+Rn+eLE+++r ++++ ++LqsEl+sLraDNiKL+EkI+f
     ee13770   503 IISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKF 552  

                   LqSYnnnsvvsrgsKKYvEDLegvessDtEsqysaqYEEsLhPfssFrkk
                   LqSY++               +g+ s+DtE++ys+qYEE+L+PfssF+k+
     ee13770   553 LQSYPG---------------RGSGSDDTELRYSSQYEERLDPFSSFSKR 587  

                   ErerYkykkLSpweKltlsfgrvILaNKttRtvFffYcigLHGllvmlvL
                   Er+r ky++LSpw+K+tls+gr++L+NK++Rt+ ffY+++LH +lv+lvL
     ee13770   588 ERQR-KYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLH-CLVFLVL 635  

                   Yklaisgyvtr<-*
                   Ykla+s++++r   
     ee13770   636 YKLAWSESMER    646  

PF08172.3.ls: domain 1 of 1, from 420 to 646: score 436.6, E = 3.1e-128
                   *->neelqkelteLkqKlseqeeLiaKLEaDLakVedvgspfnegasmms
                      ++elq  +te+++++ eq eLia+LE+DL+ ++++++p++ega++  
     ee13770   420    CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHR 466  

                   gaTRqitnriseatgklsPtSsIikGiPeegelsglsrNsvnETqsSiLp
                   +  ++i+++i+eat++++++    +G  +eg+            ++S+L+
     ee13770   467 L--EKIPEPIKEATALFYGPAAPASGALPEGQ------------VDSLLS 502  

                   IItsQRDRFRsRnteLEeqirqlnqkigkLqsElesLraDNiKLYEkIRf
                   II+sQR+RFR+Rn+eLE+++r ++++ ++LqsEl+sLraDNiKL+EkI+f
     ee13770   503 IISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKF 552  

                   LqSYnnnsvvsrgsKKYvEDLegvessDtEsqysaqYEEsLhPfssFrkk
                   LqSY++               +g+ s+DtE++ys+qYEE+L+PfssF+k+
     ee13770   553 LQSYPG---------------RGSGSDDTELRYSSQYEERLDPFSSFSKR 587  

                   ErerYkykkLSpweKltlsfgrvILaNKttRtvFffYcigLHGllvmlvL
                   Er+r ky++LSpw+K+tls+gr++L+NK++Rt+ ffY+++LH +lv+lvL
     ee13770   588 ERQR-KYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLH-CLVFLVL 635  

                   Yklaisgyvtr<-*
                   Ykla+s++++r   
     ee13770   636 YKLAWSESMER    646  

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