hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-13143646/chunk_1/iprscan-20090525-13143646.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee15524 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 310.6 2.7e-90 9 PF00096.16.fs Zinc finger, C2H2 type 292.9 5.7e-85 9 PF02023.7.ls SCAN domain 231.6 1.5e-66 1 PF02023.7.fs SCAN domain 229.7 6e-66 1 PF01352.17.fs KRAB box 39.9 1.4e-10 1 PF01352.17.ls KRAB box 40.9 4.1e-09 1 PF02892.5.fs BED zinc finger 30.2 3.2e-08 5 PF01096.9.fs Transcription factor S-II (TFIIS) 28.4 4.5e-08 8 PF07754.2.fs Domain of unknown function (DUF1610) 29.7 6e-07 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.ls 1/1 50 145 .. 1 96 [] 231.6 1.5e-66 PF02023.7.fs 1/1 50 145 .. 1 96 [] 229.7 6e-66 PF01352.17.fs 1/1 233 272 .. 1 41 [] 39.9 1.4e-10 PF01352.17.ls 1/1 233 272 .. 1 41 [] 40.9 4.1e-09 PF00096.16.ls 1/9 393 415 .. 1 24 [] 35.0 2.4e-07 PF00096.16.fs 1/9 393 415 .. 1 24 [] 33.0 5.5e-07 PF00096.16.ls 2/9 449 471 .. 1 24 [] 31.6 2.5e-06 PF00096.16.fs 2/9 449 471 .. 1 24 [] 29.7 3.8e-06 PF00096.16.fs 3/9 477 499 .. 1 24 [] 28.2 8.8e-06 PF00096.16.ls 3/9 477 499 .. 1 24 [] 30.2 6.8e-06 PF00096.16.fs 4/9 505 527 .. 1 24 [] 36.6 7e-08 PF00096.16.ls 4/9 505 527 .. 1 24 [] 38.6 2e-08 PF00096.16.fs 5/9 533 555 .. 1 24 [] 38.8 1.8e-08 PF00096.16.ls 5/9 533 555 .. 1 24 [] 40.8 4.5e-09 PF00096.16.ls 6/9 590 612 .. 1 24 [] 31.9 2.1e-06 PF00096.16.fs 6/9 590 612 .. 1 24 [] 29.9 3.3e-06 PF00096.16.ls 7/9 618 640 .. 1 24 [] 36.7 7.2e-08 PF00096.16.fs 7/9 618 640 .. 1 24 [] 34.8 2e-07 PF00096.16.fs 8/9 646 668 .. 1 24 [] 27.4 1.4e-05 PF00096.16.ls 8/9 646 668 .. 1 24 [] 29.4 1.2e-05 PF00096.16.fs 9/9 674 696 .. 1 24 [] 34.4 2.6e-07 PF00096.16.ls 9/9 674 696 .. 1 24 [] 36.4 9.5e-08 Alignments of top-scoring domains: PF02023.7.ls: domain 1 of 1, from 50 to 145: score 231.6, E = 1.5e-66 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL pspE++++rFR+fr+qe++GPrEALsrL+eLCh WLrPE++TKEQIL ee15524 50 PSPEASHLRFRRFRFQEAAGPREALSRLQELCHGWLRPEMRTKEQIL 96 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+E+Q++Vqe hPeSgEEaVtL+Ed++rel++++qqV ee15524 97 ELLVLEQFLTILPQEIQSRVQELHPESGEEAVTLVEDMQRELGRLRQQV 145 -* ee15524 - - PF02023.7.fs: domain 1 of 1, from 50 to 145: score 229.7, E = 6e-66 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL pspE++++rFR+fr+qe++GPrEALsrL+eLCh WLrPE++TKEQIL ee15524 50 PSPEASHLRFRRFRFQEAAGPREALSRLQELCHGWLRPEMRTKEQIL 96 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+E+Q++Vqe hPeSgEEaVtL+Ed++rel++++qqV ee15524 97 ELLVLEQFLTILPQEIQSRVQELHPESGEEAVTLVEDMQRELGRLRQQV 145 -* ee15524 - - PF01352.17.fs: domain 1 of 1, from 233 to 272: score 39.9, E = 1.4e-10 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* + eDVa++ +qEEW++ dp+ r+L rd ++E y+n+ Sl+ ee15524 233 -SLEDVAMYISQEEWGHQDPSKRALSRDTVQESYENVDSLE 272 PF01352.17.ls: domain 1 of 1, from 233 to 272: score 40.9, E = 4.1e-09 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* + eDVa++ +qEEW++ dp+ r+L rd ++E y+n+ Sl+ ee15524 233 -SLEDVAMYISQEEWGHQDPSKRALSRDTVQESYENVDSLE 272 PF00096.16.ls: domain 1 of 9, from 393 to 415: score 35.0, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cgk Fs++snL rH+r+H ee15524 393 HLCP-LCGKNFSNNSNLIRHQRIH 415 PF00096.16.fs: domain 1 of 9, from 393 to 415: score 33.0, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cgk Fs++snL rH+r+H ee15524 393 HLCP-LCGKNFSNNSNLIRHQRIH 415 PF00096.16.ls: domain 2 of 9, from 449 to 471: score 31.6, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+Fs++ +L+rH+rtH ee15524 449 HKCL-ECGKCFSQNTHLTRHQRTH 471 PF00096.16.fs: domain 2 of 9, from 449 to 471: score 29.7, E = 3.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+Fs++ +L+rH+rtH ee15524 449 HKCL-ECGKCFSQNTHLTRHQRTH 471 PF00096.16.fs: domain 3 of 9, from 477 to 499: score 28.2, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +snL+rH+rtH ee15524 477 YQCN-ICGKCFSCNSNLHRHQRTH 499 PF00096.16.ls: domain 3 of 9, from 477 to 499: score 30.2, E = 6.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +snL+rH+rtH ee15524 477 YQCN-ICGKCFSCNSNLHRHQRTH 499 PF00096.16.fs: domain 4 of 9, from 505 to 527: score 36.6, E = 7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +Cg+ F ++snL rH+r+H ee15524 505 YKCP-ECGEIFAHSSNLLRHQRIH 527 PF00096.16.ls: domain 4 of 9, from 505 to 527: score 38.6, E = 2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +Cg+ F ++snL rH+r+H ee15524 505 YKCP-ECGEIFAHSSNLLRHQRIH 527 PF00096.16.fs: domain 5 of 9, from 533 to 555: score 38.8, E = 1.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFsr+s+L H rtH ee15524 533 YKCP-ECGKSFSRSSHLVIHERTH 555 PF00096.16.ls: domain 5 of 9, from 533 to 555: score 40.8, E = 4.5e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFsr+s+L H rtH ee15524 533 YKCP-ECGKSFSRSSHLVIHERTH 555 PF00096.16.ls: domain 6 of 9, from 590 to 612: score 31.9, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C CgksF++ +L+rH+rtH ee15524 590 FECL-TCGKSFRQGMHLTRHQRTH 612 PF00096.16.fs: domain 6 of 9, from 590 to 612: score 29.9, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C CgksF++ +L+rH+rtH ee15524 590 FECL-TCGKSFRQGMHLTRHQRTH 612 PF00096.16.ls: domain 7 of 9, from 618 to 640: score 36.7, E = 7.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cg+ Fs++snL rH+r+H ee15524 618 YKCT-LCGENFSHRSNLIRHQRIH 640 PF00096.16.fs: domain 7 of 9, from 618 to 640: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cg+ Fs++snL rH+r+H ee15524 618 YKCT-LCGENFSHRSNLIRHQRIH 640 PF00096.16.fs: domain 8 of 9, from 646 to 668: score 27.4, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg sFs++sn rHlrtH ee15524 646 YTCH-ECGDSFSHSSNRIRHLRTH 668 PF00096.16.ls: domain 8 of 9, from 646 to 668: score 29.4, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg sFs++sn rHlrtH ee15524 646 YTCH-ECGDSFSHSSNRIRHLRTH 668 PF00096.16.fs: domain 9 of 9, from 674 to 696: score 34.4, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg+sFsr+s L +H+rtH ee15524 674 YKCS-ECGESFSRSSRLMSHQRTH 696 PF00096.16.ls: domain 9 of 9, from 674 to 696: score 36.4, E = 9.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg+sFsr+s L +H+rtH ee15524 674 YKCS-ECGESFSRSSRLMSHQRTH 696 //