hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-03500043/chunk_1/iprscan-20090618-03500043.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee16374 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 343.7 2.9e-100 10 PF00096.16.fs Zinc finger, C2H2 type 324.0 2.5e-94 10 PF01096.9.fs Transcription factor S-II (TFIIS) 46.0 1.5e-13 9 PF01286.9.fs XPA protein N-terminal 27.4 4.7e-07 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/10 38 60 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 1/10 38 60 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 2/10 66 88 .. 1 24 [] 30.7 2.2e-06 PF00096.16.ls 2/10 66 88 .. 1 24 [] 32.6 1.2e-06 PF00096.16.ls 3/10 94 116 .. 1 24 [] 38.2 2.7e-08 PF00096.16.fs 3/10 94 116 .. 1 24 [] 36.2 9e-08 PF00096.16.ls 4/10 122 144 .. 1 24 [] 41.5 2.6e-09 PF00096.16.fs 4/10 122 144 .. 1 24 [] 39.5 1e-08 PF00096.16.ls 5/10 150 172 .. 1 24 [] 36.2 1e-07 PF00096.16.fs 5/10 150 172 .. 1 24 [] 34.3 2.7e-07 PF00096.16.ls 6/10 178 200 .. 1 24 [] 30.6 5e-06 PF00096.16.fs 6/10 178 200 .. 1 24 [] 28.7 6.8e-06 PF00096.16.fs 7/10 206 228 .. 1 24 [] 33.3 4.8e-07 PF00096.16.ls 7/10 206 228 .. 1 24 [] 35.3 2e-07 PF00096.16.fs 8/10 234 256 .. 1 24 [] 35.5 1.3e-07 PF00096.16.ls 8/10 234 256 .. 1 24 [] 37.5 4.3e-08 PF00096.16.fs 9/10 262 284 .. 1 24 [] 28.5 7.4e-06 PF00096.16.ls 9/10 262 284 .. 1 24 [] 30.5 5.5e-06 PF00096.16.fs 10/10 290 312 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 10/10 290 312 .. 1 24 [] 29.7 9.3e-06 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 10, from 38 to 60: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ksnL+ H H ee16374 38 FACK-VCGKVFSHKSNLTEHEHFH 60 PF00096.16.ls: domain 1 of 10, from 38 to 60: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ksnL+ H H ee16374 38 FACK-VCGKVFSHKSNLTEHEHFH 60 PF00096.16.fs: domain 2 of 10, from 66 to 88: score 30.7, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+k +H++tH ee16374 66 FECN-ECGKAFSQKQYVIKHQNTH 88 PF00096.16.ls: domain 2 of 10, from 66 to 88: score 32.6, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+k +H++tH ee16374 66 FECN-ECGKAFSQKQYVIKHQNTH 88 PF00096.16.ls: domain 3 of 10, from 94 to 116: score 38.2, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs+k+nL +H+++H ee16374 94 FECN-ECGKSFSQKENLLTHQKIH 116 PF00096.16.fs: domain 3 of 10, from 94 to 116: score 36.2, E = 9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs+k+nL +H+++H ee16374 94 FECN-ECGKSFSQKENLLTHQKIH 116 PF00096.16.ls: domain 4 of 10, from 122 to 144: score 41.5, E = 2.6e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F +ksnL rH+rtH ee16374 122 FECK-DCGKAFIQKSNLIRHQRTH 144 PF00096.16.fs: domain 4 of 10, from 122 to 144: score 39.5, E = 1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F +ksnL rH+rtH ee16374 122 FECK-DCGKAFIQKSNLIRHQRTH 144 PF00096.16.ls: domain 5 of 10, from 150 to 172: score 36.2, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs ksnL+ H ++H ee16374 150 FVCK-ECGKTFSGKSNLTEHEKIH 172 PF00096.16.fs: domain 5 of 10, from 150 to 172: score 34.3, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs ksnL+ H ++H ee16374 150 FVCK-ECGKTFSGKSNLTEHEKIH 172 PF00096.16.ls: domain 6 of 10, from 178 to 200: score 30.6, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg++F +k+ L +H+++H ee16374 178 FKCS-ECGTAFGQKKYLIKHQNIH 200 PF00096.16.fs: domain 6 of 10, from 178 to 200: score 28.7, E = 6.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg++F +k+ L +H+++H ee16374 178 FKCS-ECGTAFGQKKYLIKHQNIH 200 PF00096.16.fs: domain 7 of 10, from 206 to 228: score 33.3, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L H r+H ee16374 206 YECN-ECGKAFSQRTSLIVHVRIH 228 PF00096.16.ls: domain 7 of 10, from 206 to 228: score 35.3, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L H r+H ee16374 206 YECN-ECGKAFSQRTSLIVHVRIH 228 PF00096.16.fs: domain 8 of 10, from 234 to 256: score 35.5, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L+ H r+H ee16374 234 YECN-VCGKAFSQSSSLTVHVRSH 256 PF00096.16.ls: domain 8 of 10, from 234 to 256: score 37.5, E = 4.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L+ H r+H ee16374 234 YECN-VCGKAFSQSSSLTVHVRSH 256 PF00096.16.fs: domain 9 of 10, from 262 to 284: score 28.5, E = 7.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs+ s+L Hlr+H ee16374 262 YGCN-ECGKAFSQFSTLALHLRIH 284 PF00096.16.ls: domain 9 of 10, from 262 to 284: score 30.5, E = 5.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs+ s+L Hlr+H ee16374 262 YGCN-ECGKAFSQFSTLALHLRIH 284 PF00096.16.fs: domain 10 of 10, from 290 to 312: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ks+ rH+++H ee16374 290 YQCS-ECGKAFSQKSHHIRHQKIH 312 PF00096.16.ls: domain 10 of 10, from 290 to 312: score 29.7, E = 9.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ks+ rH+++H ee16374 290 YQCS-ECGKAFSQKSHHIRHQKIH 312 //