# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oee19715.fasta.nr -Q ee19715.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ee19715, 872 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824315 sequences Expectation_n fit: rho(ln(x))= 5.1456+/-0.000184; mu= 13.8478+/- 0.010 mean_var=71.9152+/-14.269, 0's: 41 Z-trim: 43 B-trim: 2837 in 2/64 Lambda= 0.151239 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|45708431|gb|AAH04554.1| MED16 protein [Homo sap ( 841) 5710 1255.6 0 gi|62511180|sp|Q9Y2X0.2|MED16_HUMAN Mediator of RN ( 877) 5596 1230.7 0 gi|4808955|gb|AAD30032.1|AF121228_1 thyroid hormon ( 877) 5587 1228.8 0 gi|73987379|ref|XP_542212.2| PREDICTED: similar to ( 829) 5363 1179.9 0 gi|149034635|gb|EDL89372.1| thyroid hormone recept ( 865) 5311 1168.6 0 gi|148699683|gb|EDL31630.1| thyroid hormone recept ( 865) 5298 1165.7 0 gi|74143511|dbj|BAE28823.1| unnamed protein produc ( 864) 5238 1152.6 0 gi|62511160|sp|Q6PGF3.1|MED16_MOUSE Mediator of RN ( 828) 5207 1145.9 0 gi|109122708|ref|XP_001117192.1| PREDICTED: simila (1051) 5178 1139.6 0 gi|126323685|ref|XP_001374872.1| PREDICTED: simila ( 830) 4938 1087.2 0 gi|149034637|gb|EDL89374.1| thyroid hormone recept ( 780) 4923 1083.9 0 gi|148699684|gb|EDL31631.1| thyroid hormone recept ( 780) 4910 1081.0 0 gi|118103221|ref|XP_418220.2| PREDICTED: similar t ( 830) 4894 1077.6 0 gi|16878152|gb|AAH17282.1| MED16 protein [Homo sap ( 860) 4687 1032.4 0 gi|123884551|sp|Q08D69.1|MED16_XENTR Mediator of R ( 828) 4654 1025.2 0 gi|73987381|ref|XP_854679.1| PREDICTED: similar to ( 844) 4419 973.9 0 gi|119589993|gb|EAW69587.1| thyroid hormone recept ( 751) 4258 938.8 0 gi|119589992|gb|EAW69586.1| thyroid hormone recept ( 813) 4249 936.8 0 gi|4868008|gb|AAD31087.1|AF106934_1 vitamin D rece ( 873) 4057 895.0 0 gi|82229921|sp|Q566H4.1|MED16_XENLA Mediator of RN ( 697) 3921 865.2 0 gi|114674379|ref|XP_512222.2| PREDICTED: thyroid h ( 695) 3530 779.9 0 gi|39644785|gb|AAH07853.2| MED16 protein [Homo sap ( 504) 2563 568.8 1.8e-159 gi|149765055|ref|XP_001489486.1| PREDICTED: simila ( 330) 2109 469.6 8.5e-130 gi|149573282|ref|XP_001510303.1| PREDICTED: simila ( 330) 1938 432.3 1.4e-118 gi|47210817|emb|CAF92870.1| unnamed protein produc ( 694) 1791 400.5 1.2e-108 gi|149634417|ref|XP_001507058.1| PREDICTED: simila ( 317) 1311 295.5 2.1e-77 gi|122067238|sp|Q16K67.1|MED16_AEDAE Mediator of R ( 820) 905 207.2 2.1e-50 gi|193911654|gb|EDW10521.1| GI21142 [Drosophila mo ( 811) 871 199.8 3.5e-48 gi|115927447|ref|XP_796020.2| PREDICTED: similar t ( 629) 791 182.2 5.2e-43 gi|54637231|gb|EAL26634.1| GA18899-PA [Drosophila ( 805) 736 170.3 2.6e-39 gi|190621487|gb|EDV37011.1| GF11654 [Drosophila an ( 811) 729 168.8 7.5e-39 gi|74872316|sp|Q9W278.2|MED16_DROME Mediator of RN ( 818) 721 167.0 2.5e-38 gi|9937472|gb|AAG02459.1|AF289994_1 thyroid hormon ( 818) 721 167.0 2.5e-38 gi|194194600|gb|EDX08176.1| GD11651 [Drosophila si ( 724) 718 166.3 3.6e-38 gi|193899492|gb|EDV98358.1| GH23074 [Drosophila gr ( 848) 718 166.4 4.1e-38 gi|194178488|gb|EDW92099.1| GE14164 [Drosophila ya ( 820) 717 166.2 4.6e-38 gi|194159225|gb|EDW74126.1| GK21766 [Drosophila wi ( 832) 717 166.2 4.7e-38 gi|190658355|gb|EDV55568.1| GG22172 [Drosophila er ( 820) 716 166.0 5.4e-38 gi|194135224|gb|EDW56740.1| GM15892 [Drosophila se ( 820) 714 165.5 7.3e-38 gi|193668038|ref|XP_001947405.1| PREDICTED: simila ( 811) 698 162.0 8.1e-37 gi|194143823|gb|EDW60219.1| GJ20989 [Drosophila vi ( 799) 673 156.6 3.5e-35 gi|115932312|ref|XP_001177975.1| PREDICTED: hypoth ( 481) 613 143.3 2.1e-31 gi|156543231|ref|XP_001606537.1| PREDICTED: simila ( 808) 592 138.9 7.4e-30 gi|21392088|gb|AAM48398.1| RE11711p [Drosophila me ( 707) 565 133.0 4e-28 gi|72038756|ref|XP_790569.1| PREDICTED: similar to ( 446) 507 120.2 1.8e-24 gi|110762659|ref|XP_623610.2| PREDICTED: similar t ( 860) 492 117.1 2.9e-23 gi|108868539|gb|EAT32764.1| hypothetical protein A ( 190) 473 112.5 1.6e-22 gi|109133364|ref|XP_001114917.1| PREDICTED: simila ( 64) 430 102.7 4.5e-20 gi|156218761|gb|EDO39653.1| predicted protein [Nem ( 391) 422 101.6 6.2e-19 gi|149034636|gb|EDL89373.1| thyroid hormone recept ( 112) 375 90.9 2.9e-16 >>gi|45708431|gb|AAH04554.1| MED16 protein [Homo sapiens (841 aa) initn: 5710 init1: 5710 opt: 5710 Z-score: 6726.1 bits: 1255.6 E(): 0 Smith-Waterman score: 5710; 100.000% identity (100.000% similar) in 841 aa overlap (32-872:1-841) 10 20 30 40 50 60 ee1971 GARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHC :::::::::::::::::::::::::::::: gi|457 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHC 10 20 30 70 80 90 100 110 120 ee1971 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD 40 50 60 70 80 90 130 140 150 160 170 180 ee1971 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS 100 110 120 130 140 150 190 200 210 220 230 240 ee1971 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR 160 170 180 190 200 210 250 260 270 280 290 300 ee1971 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD 220 230 240 250 260 270 310 320 330 340 350 360 ee1971 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG 280 290 300 310 320 330 370 380 390 400 410 420 ee1971 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS 340 350 360 370 380 390 430 440 450 460 470 480 ee1971 VHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 VHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG 400 410 420 430 440 450 490 500 510 520 530 540 ee1971 KLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 KLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEE 460 470 480 490 500 510 550 560 570 580 590 600 ee1971 YTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 YTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLN 520 530 540 550 560 570 610 620 630 640 650 660 ee1971 TPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 TPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLA 580 590 600 610 620 630 670 680 690 700 710 720 ee1971 SLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 SLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLF 640 650 660 670 680 690 730 740 750 760 770 780 ee1971 RLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 RLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRL 700 710 720 730 740 750 790 800 810 820 830 840 ee1971 QFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 QFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSP 760 770 780 790 800 810 850 860 870 ee1971 NRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP ::::::::::::::::::::::::::::::: gi|457 NRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP 820 830 840 >>gi|62511180|sp|Q9Y2X0.2|MED16_HUMAN Mediator of RNA po (877 aa) initn: 5596 init1: 5596 opt: 5596 Z-score: 6591.4 bits: 1230.7 E(): 0 Smith-Waterman score: 5596; 100.000% identity (100.000% similar) in 828 aa overlap (32-859:1-828) 10 20 30 40 50 60 ee1971 GARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHC :::::::::::::::::::::::::::::: gi|625 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHC 10 20 30 70 80 90 100 110 120 ee1971 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD 40 50 60 70 80 90 130 140 150 160 170 180 ee1971 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS 100 110 120 130 140 150 190 200 210 220 230 240 ee1971 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR 160 170 180 190 200 210 250 260 270 280 290 300 ee1971 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD 220 230 240 250 260 270 310 320 330 340 350 360 ee1971 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG 280 290 300 310 320 330 370 380 390 400 410 420 ee1971 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS 340 350 360 370 380 390 430 440 450 460 470 480 ee1971 VHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 VHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG 400 410 420 430 440 450 490 500 510 520 530 540 ee1971 KLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 KLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEE 460 470 480 490 500 510 550 560 570 580 590 600 ee1971 YTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 YTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLN 520 530 540 550 560 570 610 620 630 640 650 660 ee1971 TPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 TPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLA 580 590 600 610 620 630 670 680 690 700 710 720 ee1971 SLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 SLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLF 640 650 660 670 680 690 730 740 750 760 770 780 ee1971 RLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 RLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRL 700 710 720 730 740 750 790 800 810 820 830 840 ee1971 QFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 QFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSP 760 770 780 790 800 810 850 860 870 ee1971 NRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP :::::::::::::::::: gi|625 NRTTAVKQWEQRWIKNCLAVEGRGPDACVTSRASEEAPAFVQLGPQSTHHSPRTPRSLDH 820 830 840 850 860 870 >>gi|4808955|gb|AAD30032.1|AF121228_1 thyroid hormone re (877 aa) initn: 5587 init1: 5587 opt: 5587 Z-score: 6580.8 bits: 1228.8 E(): 0 Smith-Waterman score: 5587; 99.758% identity (100.000% similar) in 828 aa overlap (32-859:1-828) 10 20 30 40 50 60 ee1971 GARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHC :::::::::::::::::::::::::::::: gi|480 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHC 10 20 30 70 80 90 100 110 120 ee1971 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|480 PSVPLACAWSCRNLITFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD 40 50 60 70 80 90 130 140 150 160 170 180 ee1971 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS 100 110 120 130 140 150 190 200 210 220 230 240 ee1971 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR 160 170 180 190 200 210 250 260 270 280 290 300 ee1971 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD 220 230 240 250 260 270 310 320 330 340 350 360 ee1971 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG 280 290 300 310 320 330 370 380 390 400 410 420 ee1971 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS 340 350 360 370 380 390 430 440 450 460 470 480 ee1971 VHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|480 VHIVHRLSLQTMAVFYSSAAPKPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG 400 410 420 430 440 450 490 500 510 520 530 540 ee1971 KLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 KLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEE 460 470 480 490 500 510 550 560 570 580 590 600 ee1971 YTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 YTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLN 520 530 540 550 560 570 610 620 630 640 650 660 ee1971 TPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 TPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLA 580 590 600 610 620 630 670 680 690 700 710 720 ee1971 SLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 SLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLF 640 650 660 670 680 690 730 740 750 760 770 780 ee1971 RLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 RLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRL 700 710 720 730 740 750 790 800 810 820 830 840 ee1971 QFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|480 QFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSP 760 770 780 790 800 810 850 860 870 ee1971 NRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP :::::::::::::::::: gi|480 NRTTAVKQWEQRWIKNCLAVEGRGPDACVTSRASEEAPAFVQLGPQSTHHSPRTPRSLDH 820 830 840 850 860 870 >>gi|73987379|ref|XP_542212.2| PREDICTED: similar to thy (829 aa) initn: 5363 init1: 5363 opt: 5363 Z-score: 6317.0 bits: 1179.9 E(): 0 Smith-Waterman score: 5363; 94.572% identity (98.311% similar) in 829 aa overlap (44-872:1-829) 20 30 40 50 60 70 ee1971 RTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCR ::::::::::.: ::::::::::::::::: gi|739 MDLAYVCEWERWPKSTHCPSVPLACAWSCR 10 20 30 80 90 100 110 120 130 ee1971 NLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADAD :::::: :::.:::::::::::::::::::.::. ::: ::::::::::::::::::::: gi|739 NLIAFTTDLRNDDQDLTRMIHILDTEHPWDVHSVNSEHSEAITCLEWDQSGSRLLSADAD 40 50 60 70 80 90 140 150 160 170 180 190 ee1971 GQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRV :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|739 GQIKCWSMADHLANSWESHVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRV 100 110 120 130 140 150 200 210 220 230 240 250 ee1971 KFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTG 160 170 180 190 200 210 260 270 280 290 300 310 ee1971 GGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITH 220 230 240 250 260 270 320 330 340 350 360 370 ee1971 LKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRIL ::::::::::::::::::::::::::::::::::::::.::::::::::::: ::::::: gi|739 LKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNVFQQISPVVGDKQPMILKWRIL 280 290 300 310 320 330 380 390 400 410 420 430 ee1971 SATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTM ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|739 SATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQSM 340 350 360 370 380 390 440 450 460 470 480 490 ee1971 AVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMG :::::::::: .::::.:::::::::::.::::::::::::::::.:::::.::.::::: gi|739 AVFYSSAAPRAADEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSMG 400 410 420 430 440 450 500 510 520 530 540 550 ee1971 HPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVL : :.:.:::::::::::::::::::::: ::::::.::::::::::::::::.::::::: gi|739 HTLDVSLALRHLLFLLEYCMVTGYDWWDTLLHVQPGMVQSLVEKLHEEYTRQNAALQQVL 460 470 480 490 500 510 560 570 580 590 600 610 ee1971 STRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTE :::::::::::::::::::.::::::.::::.:.:::::::::::::::::::::::::: gi|739 STRILAMKASLCKLSPCTVARVCDYHAKLFLVAVSSTLKSLLRPHFLNTPDKSPGDRLTE 520 530 540 550 560 570 620 630 640 650 660 670 ee1971 ICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPG .::::::.::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|739 VCTKITDADIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPG 580 590 600 610 620 630 680 690 700 710 720 730 ee1971 HSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 HSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRD 640 650 660 670 680 690 740 750 760 770 780 790 ee1971 EGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSA :::.:::::::::::::::::::::::::::.::::::::::::::::.::.::::: :: gi|739 EGPTSEPDEALVDECCLLPSQLLIPSLDWLPVSDGLVSRLQPKQPLRLHFGKAPTLPTSA 700 710 720 730 740 750 800 810 820 830 840 850 ee1971 ATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQR .::::::: :::::::::::::::::: ::::::.::::::::::.:::.:::::::::: gi|739 STLQLDGLIRAPGQPKIDHLRRLHLGAYPTEECKTCTRCGCVTMLRSPNKTTAVKQWEQR 760 770 780 790 800 810 860 870 ee1971 WIKNCLCGGLWWRVPLSYP :::::.::::: ::::::: gi|739 WIKNCVCGGLWRRVPLSYP 820 >>gi|149034635|gb|EDL89372.1| thyroid hormone receptor a (865 aa) initn: 2822 init1: 2737 opt: 5311 Z-score: 6255.4 bits: 1168.6 E(): 0 Smith-Waterman score: 5311; 90.647% identity (96.074% similar) in 866 aa overlap (5-870:6-863) 10 20 30 40 50 ee1971 GGARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKST : :. .:: :..::::. :: :.: .: ::::::::::::::.::: gi|149 MAAPDPGRWGECGPRPPGRLGARGGQEPGTVL-------GAVGMMDLAYVCEWEKWAKST 10 20 30 40 50 60 70 80 90 100 110 ee1971 HCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLE .:::.::::::::::::::: :::.::::::.:::::::::::..::. : : ::::::: gi|149 YCPSLPLACAWSCRNLIAFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLE 60 70 80 90 100 110 120 130 140 150 160 170 ee1971 WDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVE :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|149 WDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVE 120 130 140 150 160 170 180 190 200 210 220 230 ee1971 KSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCR 180 190 200 210 220 230 240 250 260 270 280 290 ee1971 LRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCT :::::::::::::::::::::.:::::::::.:::::::::::::::::::::::::::: gi|149 LRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCT 240 250 260 270 280 290 300 310 320 330 340 350 ee1971 TDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPV :: ::::.::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|149 TDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPV 300 310 320 330 340 350 360 370 380 390 400 410 ee1971 VGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHD :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|149 VGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQD 360 370 380 390 400 410 420 430 440 450 460 470 ee1971 GSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDS ::::.:::::::::::::::: :: .::::.:::::.:::::.::::::::::::::::. gi|149 GSVHMVHRLSLQTMAVFYSSA-PRSLDEPALKRPRTTGPAVHFKAMQLSWTSLALVGIDN 420 430 440 450 460 470 480 490 500 510 520 530 ee1971 HGKLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLH :::::.::.:::.:: :: :::.:::::::::::::::::::::::::.:::::::.:: gi|149 HGKLSMLRISPSLGHALEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLH 480 490 500 510 520 530 540 550 560 570 580 590 ee1971 EEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHF :::::: :::::::::::::::::::::::::.:::::::::::.::.::::::::::: gi|149 EEYTRQKPALQQVLSTRILAMKASLCKLSPCTVARVCDYHTKLFLMAITSTLKSLLRPHF 540 550 560 570 580 590 600 610 620 630 640 650 ee1971 LNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYL ::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::::: gi|149 LNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYL 600 610 620 630 640 650 660 670 680 690 700 710 ee1971 LASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSL :.::::::: :::::::::::.:::::::::::::::::::::::::::::::::::::: gi|149 LVSLPNQGSALRPGHSFLRDGASLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSL 660 670 680 690 700 710 720 730 740 750 760 770 ee1971 LFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPL :::::::::::::::::::::::.:::::::::::::.:::::::::::::::::::::: gi|149 LFRLLTKLWICCRDEGPASEPDEGLVDECCLLPSQLLVPSLDWLPASDGLVSRLQPKQPL 720 730 740 750 760 770 780 790 800 810 820 830 ee1971 RLQFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLK ::.::::::::.:.. ::::::.:::::::::::::::::: :::::::::::::::::: gi|149 RLRFGRAPTLPSSTSILQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLK 780 790 800 810 820 830 840 850 860 870 ee1971 SPNRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP :::.::::::::::::::::::::: ::::: gi|149 SPNKTTAVKQWEQRWIKNCLCGGLWRRVPLSCS 840 850 860 >>gi|148699683|gb|EDL31630.1| thyroid hormone receptor a (865 aa) initn: 2809 init1: 2724 opt: 5298 Z-score: 6240.1 bits: 1165.7 E(): 0 Smith-Waterman score: 5298; 90.531% identity (95.958% similar) in 866 aa overlap (5-870:6-863) 10 20 30 40 50 ee1971 GGARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKST : :. .:: :..::::. :: :.: .: ::::::::::::::.::: gi|148 MAASDPGRWGECGPRPPGRLGARGGQEPGTVL-------GAVGMMDLAYVCEWEKWAKST 10 20 30 40 50 60 70 80 90 100 110 ee1971 HCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLE .:::.::::::::::::::: :::.::::::.:::::::::::..::. : : ::::::: gi|148 YCPSLPLACAWSCRNLIAFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLE 60 70 80 90 100 110 120 130 140 150 160 170 ee1971 WDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVE :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|148 WDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVE 120 130 140 150 160 170 180 190 200 210 220 230 ee1971 KSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCR 180 190 200 210 220 230 240 250 260 270 280 290 ee1971 LRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCT :::::::::::::::::::::.:::::::::.:::::::::::::::::::::::::::: gi|148 LRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCT 240 250 260 270 280 290 300 310 320 330 340 350 ee1971 TDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPV :: ::::.::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|148 TDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPV 300 310 320 330 340 350 360 370 380 390 400 410 ee1971 VGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHD :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|148 VGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQD 360 370 380 390 400 410 420 430 440 450 460 470 ee1971 GSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDS ::::.:::::::::::::::: :: .::::.:::::. ::::.::::::::::::::::. gi|148 GSVHMVHRLSLQTMAVFYSSA-PRSLDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDN 420 430 440 450 460 470 480 490 500 510 520 530 ee1971 HGKLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLH :::::.::.:::.::::: :::.:::::::::::::::::::::::::.:::::::.:: gi|148 HGKLSMLRISPSLGHPLEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLH 480 490 500 510 520 530 540 550 560 570 580 590 ee1971 EEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHF :::::: :::::::::::::::::::::::::.:::::::::::.::.::::::::::: gi|148 EEYTRQKPALQQVLSTRILAMKASLCKLSPCTVARVCDYHTKLFLMAITSTLKSLLRPHF 540 550 560 570 580 590 600 610 620 630 640 650 ee1971 LNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYL ::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::::: gi|148 LNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYL 600 610 620 630 640 650 660 670 680 690 700 710 ee1971 LASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSL :.::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSL 660 670 680 690 700 710 720 730 740 750 760 770 ee1971 LFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPL :::::::::::::::: ::::::.:::::::::::::.:.:::::::::::::::::::: gi|148 LFRLLTKLWICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQPL 720 730 740 750 760 770 780 790 800 810 820 830 ee1971 RLQFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLK ::.::::::::.:..:::::::.:::::::::::::::::: :::::::::::::::::: gi|148 RLRFGRAPTLPSSTSTLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLK 780 790 800 810 820 830 840 850 860 870 ee1971 SPNRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP :::.:::: :::::::::::::::: ::::: gi|148 SPNKTTAVTQWEQRWIKNCLCGGLWRRVPLSCS 840 850 860 >>gi|74143511|dbj|BAE28823.1| unnamed protein product [M (864 aa) initn: 5284 init1: 2707 opt: 5238 Z-score: 6169.3 bits: 1152.6 E(): 0 Smith-Waterman score: 5274; 90.289% identity (95.838% similar) in 865 aa overlap (5-869:6-861) 10 20 30 40 50 ee1971 GGARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKST : :. .:: :..::::. : :.: .: ::::::::::::::.::: gi|741 MAASDPGRWGECGPRPPGRLGARGGQPG-TVL-------GAVGMMDLAYVCEWEKWAKST 10 20 30 40 50 60 70 80 90 100 110 ee1971 HCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLE .:::.::::::::::::::: :::.::::::.:::::::::::..::. : : ::::::: gi|741 YCPSLPLACAWSCRNLIAFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLE 60 70 80 90 100 110 120 130 140 150 160 170 ee1971 WDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVE :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|741 WDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVE 120 130 140 150 160 170 180 190 200 210 220 230 ee1971 KSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCR 180 190 200 210 220 230 240 250 260 270 280 290 ee1971 LRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCT :::::::::::::::::::::.:::::::::.:::::::::::::::::::::::::::: gi|741 LRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCT 240 250 260 270 280 290 300 310 320 330 340 350 ee1971 TDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPV :: ::::.::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|741 TDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPV 300 310 320 330 340 350 360 370 380 390 400 410 ee1971 VGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHD :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|741 VGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQD 360 370 380 390 400 410 420 430 440 450 460 470 ee1971 GSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDS ::::.:::::::::::::::: :: .::::.:::::. ::::.::::::::::::::::. gi|741 GSVHMVHRLSLQTMAVFYSSA-PRSLDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDN 420 430 440 450 460 470 480 490 500 510 520 530 ee1971 HGKLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLH :::::.::.:::.::::: :::.:::::::::::::::::::::::::.:::::::.:: gi|741 HGKLSMLRISPSLGHPLEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLH 480 490 500 510 520 530 540 550 560 570 580 590 ee1971 EEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHF :::::: :::::::::::::::::::::::::.:::::::::::.::.::::::::::: gi|741 EEYTRQKPALQQVLSTRILAMKASLCKLSPCTVARVCDYHTKLFLMAITSTLKSLLRPHF 540 550 560 570 580 590 600 610 620 630 640 650 ee1971 LNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYL ::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::::: gi|741 LNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYL 600 610 620 630 640 650 660 670 680 690 700 710 ee1971 LASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSL :.::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSL 660 670 680 690 700 710 720 730 740 750 760 770 ee1971 LFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPL :::::::::::::::: ::::::.:::::::::::::.:.:::::::::::::::::::: gi|741 LFRLLTKLWICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQPL 720 730 740 750 760 770 780 790 800 810 820 830 ee1971 RLQFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLK ::.::::::::.:..:::::::.:::::::::::::::::: :::::::::::::::::: gi|741 RLRFGRAPTLPSSTSTLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLK 780 790 800 810 820 830 840 850 860 870 ee1971 SPNRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP :::.:::: :::::::::::::::: :::. gi|741 SPNKTTAVTQWEQRWIKNCLCGGLWRRVPVGCS 840 850 860 >>gi|62511160|sp|Q6PGF3.1|MED16_MOUSE Mediator of RNA po (828 aa) initn: 2710 init1: 2710 opt: 5207 Z-score: 6133.0 bits: 1145.9 E(): 0 Smith-Waterman score: 5207; 92.503% identity (97.461% similar) in 827 aa overlap (44-870:1-826) 20 30 40 50 60 70 ee1971 RTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCR ::::::::::::.:::.:::.::::::::: gi|625 MDLAYVCEWEKWAKSTYCPSLPLACAWSCR 10 20 30 80 90 100 110 120 130 ee1971 NLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADAD :: ::: :::.::::::.:::::::::::..::. : : ::::::::::::::::::::: gi|625 NLTAFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLEWDQSGSRLLSADAD 40 50 60 70 80 90 140 150 160 170 180 190 ee1971 GQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRV :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: gi|625 GQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRV 100 110 120 130 140 150 200 210 220 230 240 250 ee1971 KFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 KFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTG 160 170 180 190 200 210 260 270 280 290 300 310 ee1971 GGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITH :::::::.:::::::::.:::::::::::::::::::::::::::::: ::::.:::::: gi|625 GGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCTTDPNRKDRFPAITH 220 230 240 250 260 270 320 330 340 350 360 370 ee1971 LKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRIL ::::::::::::::::::::::.::::::::::::::::::::::::::::: ::::::: gi|625 LKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRIL 280 290 300 310 320 330 380 390 400 410 420 430 ee1971 SATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTM ::::::::::::::::::::::::::::::::::::::::::::.:::::.::::::::. gi|625 SATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVHRLSLQTL 340 350 360 370 380 390 440 450 460 470 480 490 ee1971 AVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMG ::::::: :: .::::.:: ::. ::::.::::::::::::::::.:::::.::.:::.: gi|625 AVFYSSA-PRSLDEPALKRLRTTCPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLG 400 410 420 430 440 500 510 520 530 540 550 ee1971 HPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVL :::: :::.:::::::::::::::::::::::::.:::::::.:::::::: :::::: gi|625 HPLEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVL 450 460 470 480 490 500 560 570 580 590 600 610 ee1971 STRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTE :::::::::::::::::::.:::::::::::.::.:::::::::::::::::::::::.: gi|625 STRILAMKASLCKLSPCTVARVCDYHTKLFLMAITSTLKSLLRPHFLNTPDKSPGDRLAE 510 520 530 540 550 560 620 630 640 650 660 670 ee1971 ICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPG ::.::::::::::::::::::::::::::::::::::::::::::::.::::::: :::: gi|625 ICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLVSLPNQGSPLRPG 570 580 590 600 610 620 680 690 700 710 720 730 ee1971 HSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 HSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRD 630 640 650 660 670 680 740 750 760 770 780 790 ee1971 EGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSA :: ::::::.:::::::::::::.:.::::::::::::::::::::::.::::::::.:. gi|625 EGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQPLRLRFGRAPTLPSST 690 700 710 720 730 740 800 810 820 830 840 850 ee1971 ATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQR .:::::::.:::::::::::::::::: :::::::::::::::::::::.:::: ::::: gi|625 STLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKTTAVTQWEQR 750 760 770 780 790 800 860 870 ee1971 WIKNCLCGGLWWRVPLSYP ::::::::::: ::::: gi|625 WIKNCLCGGLWRRVPLSCS 810 820 >>gi|109122708|ref|XP_001117192.1| PREDICTED: similar to (1051 aa) initn: 5116 init1: 3027 opt: 5178 Z-score: 6097.4 bits: 1139.6 E(): 0 Smith-Waterman score: 5178; 92.584% identity (96.053% similar) in 836 aa overlap (32-859:1-836) 10 20 30 40 50 60 ee1971 GARPEALGKIAPRTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHC :::::::::::::::::::::::::::::: gi|109 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHC 10 20 30 70 80 90 100 110 120 ee1971 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWD ::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::: gi|109 PSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSDHREAITCLEWD 40 50 60 70 80 90 130 140 150 160 170 180 ee1971 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKS 100 110 120 130 140 150 190 200 210 220 230 240 ee1971 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLR 160 170 180 190 200 210 250 260 270 280 290 300 ee1971 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTD 220 230 240 250 260 270 310 320 330 340 350 360 ee1971 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVG 280 290 300 310 320 330 370 380 390 400 410 420 ee1971 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGS 340 350 360 370 380 390 430 440 450 460 470 480 ee1971 VHIVHRLSLQTMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHG :::::::::::::::::::.::::::::.:::::::::::.::::::::::::::::..: gi|109 VHIVHRLSLQTMAVFYSSATPRPVDEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNQG 400 410 420 430 440 450 490 500 510 520 530 ee1971 KLSVLRLSPSMGHPLEVG---LALRHLLFLLE---YCMVTGYDWWDILLHVQPSMVQSLV :.: : ..: .:. : : ::.:::..::: .:.. : .:. :: . .:. gi|109 KVSCLCVDPPIGRRAESGHGGLAIRHLVLLLETGSHCVIQVAARWHRILQPQPPKMLQLI 460 470 480 490 500 510 540 550 560 570 580 590 ee1971 EK--LHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKS .. : . . :. ::::::::::::::::::::::::::::::::::::::::::: gi|109 NSVLLDQALWGDPASCPQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKS 520 530 540 550 560 570 600 610 620 630 640 650 ee1971 LLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVG ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|109 LLRPHFLNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVG 580 590 600 610 620 630 660 670 680 690 700 710 ee1971 DFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDT 640 650 660 670 680 690 720 730 740 750 760 770 ee1971 QDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRL 700 710 720 730 740 750 780 790 800 810 820 830 ee1971 QPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCG 760 770 780 790 800 810 840 850 860 870 ee1971 CVTMLKSPNRTTAVKQWEQRWIKNCLCGGLWWRVPLSYP :::::::::::::::::::::::::: gi|109 CVTMLKSPNRTTAVKQWEQRWIKNCLAVEGHGPDACVTSRAAEEAPAFVQLGPWPTYRPP 820 830 840 850 860 870 >>gi|126323685|ref|XP_001374872.1| PREDICTED: similar to (830 aa) initn: 4693 init1: 4693 opt: 4938 Z-score: 5815.8 bits: 1087.2 E(): 0 Smith-Waterman score: 4938; 86.369% identity (95.899% similar) in 829 aa overlap (44-871:1-829) 20 30 40 50 60 70 ee1971 RTPAELGARADQELVTALMCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCR ::::::::::: ::.::::.::.:::::: gi|126 MDLAYVCEWEKRPKSNHCPSIPLVCAWSCR 10 20 30 80 90 100 110 120 130 ee1971 NLIAFTMDLRSDDQ-DLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADA :::::: ::..... :::.::::::::::::..:: :::.: :::::::::::::::::: gi|126 NLIAFTTDLKNEEEKDLTHMIHILDTEHPWDVYSINSEHNEMITCLEWDQSGSRLLSADA 40 50 60 70 80 90 140 150 160 170 180 190 ee1971 DGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSR ::..:::::.::::::::..:::.:::::::.:::::::::::::::::::::::.:::: gi|126 DGHVKCWSMSDHLANSWENTVGSMVEGDPIVSLSWLHNGVKLALHVEKSGASSFGDKFSR 100 110 120 130 140 150 200 210 220 230 240 250 ee1971 VKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFT ::::::::::::::::::::::.:::::::::::.:::::::::::::: :::::::::: gi|126 VKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADIAFT 160 170 180 190 200 210 260 270 280 290 300 310 ee1971 GGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAIT :::::::::.::::.:::::::::::::.:::::::::::::::::::: ::::.:::: gi|126 GGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCRIDTEILPSLFMRCTTDPARKDKYPAIT 220 230 240 250 260 270 320 330 340 350 360 370 ee1971 HLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRI ::::::::::::::::::.: ::::::::::::::::::::::::::::.::: :::::: gi|126 HLKFLARDMSEQVLLCASNQMSSIVECWSLRKEGLPVNNIFQQISPVVGEKQPMILKWRI 280 290 300 310 320 330 380 390 400 410 420 430 ee1971 LSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQT ::::::::::::::::::::::::::::::.::.: :::::::::::::::::::::::: gi|126 LSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFCPGLGLALAFHDGSVHIVHRLSLQT 340 350 360 370 380 390 440 450 460 470 480 490 ee1971 MAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSM ::.::.:.. ::::: :.:: :.:::..:.::::::::::::::::.:::::.::.:::: gi|126 MAMFYGSSSQRPVDEQAIKRQRAAGPSIHFKAMQLSWTSLALVGIDNHGKLSMLRISPSM 400 410 420 430 440 450 500 510 520 530 540 550 ee1971 GHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQV :: :.....:::::::::::::::::::::::::::::::.::::::::: ::.:::::: gi|126 GHALDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPSMVQNLVEKLHEEYMRQNAALQQV 460 470 480 490 500 510 560 570 580 590 600 610 ee1971 LSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLT :::::.:::::::::: :::.::::::.:::::::::::::::::::::::::::::::: gi|126 LSTRIVAMKASLCKLSSCTVARVCDYHAKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLT 520 530 540 550 560 570 620 630 640 650 660 670 ee1971 EICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRP :::.:::::::::::::::::::::.:.:::.::::.::::::::::::::::::: .:: gi|126 EICSKITDVDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRP 580 590 600 610 620 630 680 690 700 710 720 730 ee1971 GHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCR ::::::::.::::::::::::::::::::::::.::::::::::::::::::::::.::: gi|126 GHSFLRDGASLGMLRELMVVIRIWGLLKPSCLPIYTATSDTQDSMSLLFRLLTKLWLCCR 640 650 660 670 680 690 740 750 760 770 780 790 ee1971 DEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGS ::. :::::.:.:::::::::::::.::::: :::..:.:: :: .:::::.:: : : gi|126 DENHPSEPDETLIDECCLLPSQLLIPNLDWLPISDGIISKLQSKQLVRLQFGKAPGLLGY 700 710 720 730 740 750 800 810 820 830 840 850 ee1971 AATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQ :.: .: :::::::::::::::::::: ::::::.::::::::.:.::...:::::::: gi|126 AGTPPFDVLARAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTVLRSPHKATAVKQWEQ 760 770 780 790 800 810 860 870 ee1971 RWIKNCLCGGLWWRVPLSYP :: ::::::::: :.: :: gi|126 RWTKNCLCGGLWRRMPASYS 820 830 872 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 04:06:57 2008 done: Fri Aug 8 04:08:56 2008 Total Scan time: 1028.490 Total Display time: 0.470 Function used was FASTA [version 34.26.5 April 26, 2007]