hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-04043164/chunk_1/iprscan-20090618-04043164.nocrc
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Query sequence: ee21340
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         133.1    6.9e-37   5
PF00096.16.fs Zinc finger, C2H2 type                         123.3    6.3e-34   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/5     416   438 ..     1    24 []    26.3  2.7e-05
PF00096.16.ls   1/5     416   438 ..     1    24 []    28.2  2.6e-05
PF00096.16.ls   2/5     444   466 ..     1    24 []    29.9  8.4e-06
PF00096.16.fs   2/5     444   466 ..     1    24 []    27.9    1e-05
PF00096.16.fs   4/5    2098  2120 ..     1    24 []    29.6    4e-06
PF00096.16.ls   4/5    2098  2120 ..     1    24 []    31.6  2.6e-06
PF00096.16.ls   5/5    2126  2150 ..     1    24 []    28.2  2.7e-05
PF00096.16.fs   5/5    2126  2150 ..     1    24 []    26.2  2.8e-05

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 5, from 416 to 438: score 26.3, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C++++  +s L +H+r+H   
     ee21340   416    YICE-YCNRACAKPSVLLKHIRSH    438  

PF00096.16.ls: domain 1 of 5, from 416 to 438: score 28.2, E = 2.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C++++  +s L +H+r+H   
     ee21340   416    YICE-YCNRACAKPSVLLKHIRSH    438  

PF00096.16.ls: domain 2 of 5, from 444 to 466: score 29.9, E = 8.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C   Cg sF++ksnL +H+++H   
     ee21340   444    YPCV-TCGFSFKTKSNLYKHKKSH    466  

PF00096.16.fs: domain 2 of 5, from 444 to 466: score 27.9, E = 1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C   Cg sF++ksnL +H+++H   
     ee21340   444    YPCV-TCGFSFKTKSNLYKHKKSH    466  

PF00096.16.fs: domain 4 of 5, from 2098 to 2120: score 29.6, E = 4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cg +++ +s Lk+H+rtH   
     ee21340  2098    YICE-ECGIRCKKPSMLKKHIRTH    2120 

PF00096.16.ls: domain 4 of 5, from 2098 to 2120: score 31.6, E = 2.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cg +++ +s Lk+H+rtH   
     ee21340  2098    YICE-ECGIRCKKPSMLKKHIRTH    2120 

PF00096.16.ls: domain 5 of 5, from 2126 to 2150: score 28.2, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y C+ +C+ sF++k+nL++H++++ H   
     ee21340  2126    YHCT-YCNFSFKTKGNLTKHMKSkaH    2150 

PF00096.16.fs: domain 5 of 5, from 2126 to 2150: score 26.2, E = 2.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y C+ +C+ sF++k+nL++H++++ H   
     ee21340  2126    YHCT-YCNFSFKTKGNLTKHMKSkaH    2150 

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