hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-04114664/chunk_1/iprscan-20090618-04114664.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee21720 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02023.7.ls SCAN domain 241.7 1.5e-69 1 PF02023.7.fs SCAN domain 239.7 5.7e-69 1 PF00096.16.ls Zinc finger, C2H2 type 193.7 3.9e-55 6 PF00096.16.fs Zinc finger, C2H2 type 181.9 1.4e-51 6 PF01096.9.fs Transcription factor S-II (TFIIS) 29.2 2.5e-08 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.fs 1/1 45 140 .. 1 96 [] 239.7 5.7e-69 PF02023.7.ls 1/1 45 140 .. 1 96 [] 241.7 1.5e-69 PF00096.16.ls 1/6 251 273 .. 1 24 [] 33.2 8.3e-07 PF00096.16.fs 1/6 251 273 .. 1 24 [] 31.3 1.5e-06 PF00096.16.ls 2/6 279 301 .. 1 24 [] 39.1 1.4e-08 PF00096.16.fs 2/6 279 301 .. 1 24 [] 37.1 5.4e-08 PF00096.16.ls 3/6 307 329 .. 1 24 [] 33.6 6.3e-07 PF00096.16.fs 3/6 307 329 .. 1 24 [] 31.6 1.2e-06 PF00096.16.ls 4/6 335 357 .. 1 24 [] 27.4 4.8e-05 PF00096.16.fs 4/6 335 357 .. 1 24 [] 25.4 4.4e-05 PF00096.16.fs 5/6 363 385 .. 1 24 [] 29.5 4.2e-06 PF00096.16.ls 5/6 363 385 .. 1 24 [] 31.5 2.8e-06 PF00096.16.fs 6/6 391 413 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 6/6 391 413 .. 1 24 [] 29.0 1.5e-05 Alignments of top-scoring domains: PF02023.7.fs: domain 1 of 1, from 45 to 140: score 239.7, E = 5.7e-69 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL +++E++Rq FRqf+Yqet+GPrEALsrLReLChqWLrPE+hTKEQIL ee21720 45 SGQEASRQLFRQFCYQETPGPREALSRLRELCHQWLRPEIHTKEQIL 91 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+ElQawV+ehhPeSgEEaV+++EdLe+el epg q ee21720 92 ELLVLEQFLTILPEELQAWVREHHPESGEEAVAVVEDLEQELSEPGNQA 140 -* ee21720 - - PF02023.7.ls: domain 1 of 1, from 45 to 140: score 241.7, E = 1.5e-69 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL +++E++Rq FRqf+Yqet+GPrEALsrLReLChqWLrPE+hTKEQIL ee21720 45 SGQEASRQLFRQFCYQETPGPREALSRLRELCHQWLRPEIHTKEQIL 91 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+ElQawV+ehhPeSgEEaV+++EdLe+el epg q ee21720 92 ELLVLEQFLTILPEELQAWVREHHPESGEEAVAVVEDLEQELSEPGNQA 140 -* ee21720 - - PF00096.16.ls: domain 1 of 6, from 251 to 273: score 33.2, E = 8.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s L H+r+H ee21720 251 HRCN-ECGKSFTKSSVLIEHQRIH 273 PF00096.16.fs: domain 1 of 6, from 251 to 273: score 31.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s L H+r+H ee21720 251 HRCN-ECGKSFTKSSVLIEHQRIH 273 PF00096.16.ls: domain 2 of 6, from 279 to 301: score 39.1, E = 1.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+s+L+ H+r+H ee21720 279 YECE-ECGKAFSRRSSLNEHRRSH 301 PF00096.16.fs: domain 2 of 6, from 279 to 301: score 37.1, E = 5.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+s+L+ H+r+H ee21720 279 YECE-ECGKAFSRRSSLNEHRRSH 301 PF00096.16.ls: domain 3 of 6, from 307 to 329: score 33.6, E = 6.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + L+rH+r+H ee21720 307 YQCK-ECGKAFSASNGLTRHRRIH 329 PF00096.16.fs: domain 3 of 6, from 307 to 329: score 31.6, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + L+rH+r+H ee21720 307 YQCK-ECGKAFSASNGLTRHRRIH 329 PF00096.16.ls: domain 4 of 6, from 335 to 357: score 27.4, E = 4.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s L +H+r+H ee21720 335 YECK-VCGKAFLLSSCLVQHQRIH 357 PF00096.16.fs: domain 4 of 6, from 335 to 357: score 25.4, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s L +H+r+H ee21720 335 YECK-VCGKAFLLSSCLVQHQRIH 357 PF00096.16.fs: domain 5 of 6, from 363 to 385: score 29.5, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F +++ L +Hlr+H ee21720 363 YQCR-ECGKAFIQNAGLFQHLRVH 385 PF00096.16.ls: domain 5 of 6, from 363 to 385: score 31.5, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F +++ L +Hlr+H ee21720 363 YQCR-ECGKAFIQNAGLFQHLRVH 385 PF00096.16.fs: domain 6 of 6, from 391 to 413: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k Fs + Lk+H+++H ee21720 391 YQCS-QCSKLFSKRTLLKKHQKIH 413 PF00096.16.ls: domain 6 of 6, from 391 to 413: score 29.0, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k Fs + Lk+H+++H ee21720 391 YQCS-QCSKLFSKRTLLKKHQKIH 413 //