hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-04301874/chunk_1/iprscan-20090618-04301874.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ee22834 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 492.7 4e-145 14 PF00096.16.fs Zinc finger, C2H2 type 470.4 2e-138 15 PF01352.17.fs KRAB box 100.4 6.4e-28 1 PF01352.17.ls KRAB box 102.4 1.2e-27 1 PF01096.9.fs Transcription factor S-II (TFIIS) 54.0 5.2e-16 12 PF01286.9.fs XPA protein N-terminal 41.3 5.1e-11 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 74 114 .. 1 41 [] 102.4 1.2e-27 PF01352.17.fs 1/1 74 114 .. 1 41 [] 100.4 6.4e-28 PF00096.16.ls 1/14 281 303 .. 1 24 [] 30.8 4.3e-06 PF00096.16.fs 2/15 281 303 .. 1 24 [] 28.9 6e-06 PF00096.16.ls 2/14 309 331 .. 1 24 [] 35.5 1.7e-07 PF00096.16.fs 3/15 309 331 .. 1 24 [] 33.5 4.1e-07 PF00096.16.ls 3/14 337 359 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 4/15 337 359 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 4/14 365 387 .. 1 24 [] 40.6 5.1e-09 PF00096.16.fs 5/15 365 387 .. 1 24 [] 38.6 2e-08 PF00096.16.fs 6/15 393 415 .. 1 24 [] 24.5 7.5e-05 PF00096.16.ls 5/14 393 415 .. 1 24 [] 26.4 9.1e-05 PF00096.16.fs 7/15 421 443 .. 1 24 [] 33.2 5e-07 PF00096.16.ls 6/14 421 443 .. 1 24 [] 35.2 2.1e-07 PF00096.16.ls 7/14 449 471 .. 1 24 [] 34.9 2.7e-07 PF00096.16.fs 8/15 449 471 .. 1 24 [] 32.9 6e-07 PF00096.16.ls 8/14 477 499 .. 1 24 [] 38.3 2.4e-08 PF00096.16.fs 9/15 477 499 .. 1 24 [] 36.3 8.4e-08 PF00096.16.fs 10/15 505 527 .. 1 24 [] 30.6 2.3e-06 PF00096.16.ls 9/14 505 527 .. 1 24 [] 32.5 1.3e-06 PF00096.16.ls 10/14 533 555 .. 1 24 [] 36.6 8e-08 PF00096.16.fs 11/15 533 555 .. 1 24 [] 34.6 2.2e-07 PF00096.16.ls 11/14 561 583 .. 1 24 [] 35.5 1.7e-07 PF00096.16.fs 12/15 561 583 .. 1 24 [] 33.5 4.2e-07 PF00096.16.ls 12/14 589 611 .. 1 24 [] 37.6 3.9e-08 PF00096.16.fs 13/15 589 611 .. 1 24 [] 35.6 1.2e-07 PF00096.16.fs 14/15 617 639 .. 1 24 [] 32.6 7.1e-07 PF00096.16.ls 13/14 617 639 .. 1 24 [] 34.6 3.3e-07 PF00096.16.fs 15/15 645 667 .. 1 24 [] 39.4 1.1e-08 PF00096.16.ls 14/14 645 667 .. 1 24 [] 41.4 2.8e-09 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 74 to 114: score 102.4, E = 1.2e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaVdFtqEEW+ L+p Qr+LYrdVMlE+ysnLv++g ee22834 74 VTFEDVAVDFTQEEWQYLNPPQRTLYRDVMLETYSNLVFVG 114 PF01352.17.fs: domain 1 of 1, from 74 to 114: score 100.4, E = 6.4e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaVdFtqEEW+ L+p Qr+LYrdVMlE+ysnLv++g ee22834 74 VTFEDVAVDFTQEEWQYLNPPQRTLYRDVMLETYSNLVFVG 114 PF00096.16.ls: domain 1 of 14, from 281 to 303: score 30.8, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C k+Fs ks+L H+rtH ee22834 281 FECT-ACRKTFSKKSHLIVHWRTH 303 PF00096.16.fs: domain 2 of 15, from 281 to 303: score 28.9, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C k+Fs ks+L H+rtH ee22834 281 FECT-ACRKTFSKKSHLIVHWRTH 303 PF00096.16.ls: domain 2 of 14, from 309 to 331: score 35.5, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ks+L HlrtH ee22834 309 FGCT-ECGKAFSQKSQLIIHLRTH 331 PF00096.16.fs: domain 3 of 15, from 309 to 331: score 33.5, E = 4.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ks+L HlrtH ee22834 309 FGCT-ECGKAFSQKSQLIIHLRTH 331 PF00096.16.ls: domain 3 of 14, from 337 to 359: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +Cgk+F+ ks+ H rtH ee22834 337 FECP-ECGKAFREKSTVIIHYRTH 359 PF00096.16.fs: domain 4 of 15, from 337 to 359: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +Cgk+F+ ks+ H rtH ee22834 337 FECP-ECGKAFREKSTVIIHYRTH 359 PF00096.16.ls: domain 4 of 14, from 365 to 387: score 40.6, E = 5.1e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ksnL H++tH ee22834 365 YECN-ECGKAFTQKSNLIVHQKTH 387 PF00096.16.fs: domain 5 of 15, from 365 to 387: score 38.6, E = 2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ksnL H++tH ee22834 365 YECN-ECGKAFTQKSNLIVHQKTH 387 PF00096.16.fs: domain 6 of 15, from 393 to 415: score 24.5, E = 7.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF +k +L H tH ee22834 393 YECT-KCGESFIQKLDLIIHHSTH 415 PF00096.16.ls: domain 5 of 14, from 393 to 415: score 26.4, E = 9.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF +k +L H tH ee22834 393 YECT-KCGESFIQKLDLIIHHSTH 415 PF00096.16.fs: domain 7 of 15, from 421 to 443: score 33.2, E = 5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+Fs+ks+L H+rtH ee22834 421 HECN-ECKKTFSDKSTLIIHQRTH 443 PF00096.16.ls: domain 6 of 14, from 421 to 443: score 35.2, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+Fs+ks+L H+rtH ee22834 421 HECN-ECKKTFSDKSTLIIHQRTH 443 PF00096.16.ls: domain 7 of 14, from 449 to 471: score 34.9, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ ks+L H+rtH ee22834 449 HKCT-ECGKSFNEKSTLIVHQRTH 471 PF00096.16.fs: domain 8 of 15, from 449 to 471: score 32.9, E = 6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ ks+L H+rtH ee22834 449 HKCT-ECGKSFNEKSTLIVHQRTH 471 PF00096.16.ls: domain 8 of 14, from 477 to 499: score 38.3, E = 2.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ksnL H+rtH ee22834 477 YECD-VCGKTFTQKSNLGVHQRTH 499 PF00096.16.fs: domain 9 of 15, from 477 to 499: score 36.3, E = 8.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ksnL H+rtH ee22834 477 YECD-VCGKTFTQKSNLGVHQRTH 499 PF00096.16.fs: domain 10 of 15, from 505 to 527: score 30.6, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+Fs+ks L H+r H ee22834 505 FECN-ECEKAFSQKSYLMLHQRGH 527 PF00096.16.ls: domain 9 of 14, from 505 to 527: score 32.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+Fs+ks L H+r H ee22834 505 FECN-ECEKAFSQKSYLMLHQRGH 527 PF00096.16.ls: domain 10 of 14, from 533 to 555: score 36.6, E = 8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs+ks L H+rtH ee22834 533 YECN-ECEKAFSQKSYLIIHQRTH 555 PF00096.16.fs: domain 11 of 15, from 533 to 555: score 34.6, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs+ks L H+rtH ee22834 533 YECN-ECEKAFSQKSYLIIHQRTH 555 PF00096.16.ls: domain 11 of 14, from 561 to 583: score 35.5, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ ks L H+r+H ee22834 561 YKCN-ECGKAFREKSKLIIHQRIH 583 PF00096.16.fs: domain 12 of 15, from 561 to 583: score 33.5, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ ks L H+r+H ee22834 561 YKCN-ECGKAFREKSKLIIHQRIH 583 PF00096.16.ls: domain 12 of 14, from 589 to 611: score 37.6, E = 3.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C k+Fs+ks+L H+rtH ee22834 589 YECP-VCWKAFSQKSQLIIHQRTH 611 PF00096.16.fs: domain 13 of 15, from 589 to 611: score 35.6, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +C k+Fs+ks+L H+rtH ee22834 589 YECP-VCWKAFSQKSQLIIHQRTH 611 PF00096.16.fs: domain 14 of 15, from 617 to 639: score 32.6, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ ks+++ H+rtH ee22834 617 YACT-ECGKAFREKSTFTVHQRTH 639 PF00096.16.ls: domain 13 of 14, from 617 to 639: score 34.6, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ ks+++ H+rtH ee22834 617 YACT-ECGKAFREKSTFTVHQRTH 639 PF00096.16.fs: domain 15 of 15, from 645 to 667: score 39.4, E = 1.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ksnL H+rtH ee22834 645 YKCT-ECGKAFTQKSNLIVHQRTH 667 PF00096.16.ls: domain 14 of 14, from 645 to 667: score 41.4, E = 2.8e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ksnL H+rtH ee22834 645 YKCT-ECGKAFTQKSNLIVHQRTH 667 //