hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-13262451/chunk_1/iprscan-20090525-13262451.nocrc
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Query sequence: ee24251
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF05349.3.fs    GATA-type transcription activator, N-   182.5    1.8e-55   2
PF05349.3.ls    GATA-type transcription activator, N-   175.3    1.4e-49   1
PF00320.17.fs   GATA zinc finger                        141.8    7.6e-41   2
PF00320.17.ls   GATA zinc finger                        145.8    1.1e-40   2
PF08271.2.fs    TFIIB zinc-binding                       25.9    6.5e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05349.3.ls   1/1     157   391 ..     1   183 []   175.3  1.4e-49
PF05349.3.fs   1/2     157   251 ..     1    85 [.   104.7  9.3e-32
PF05349.3.fs   2/2     261   391 ..    80   183 .]    77.8  1.4e-23
PF00320.17.ls   1/2     400   434 ..     1    36 []    68.8  1.6e-17
PF00320.17.fs   1/2     400   434 ..     1    36 []    66.8    8e-19
PF00320.17.fs   2/2     454   488 ..     1    36 []    75.0  3.1e-21
PF00320.17.ls   2/2     454   488 ..     1    36 []    77.0  5.4e-20

Alignments of top-scoring domains:
PF05349.3.ls: domain 1 of 1, from 157 to 391: score 175.3, E = 1.4e-49
                   *->MYqsLAlaaNhGPsgYdhdtGnFmHSa.......tAASSPVYVPTTR
                      MYq+LA  +++GP++Yd+ +G+F HSa        AASSPVYVPTTR
     ee24251   157    MYQTLAALSSQGPAAYDGAPGGFVHSAaaaaaaaAAASSPVYVPTTR 203  

                   VpSmLqsLPY.LQtcg...ssQqghHlsnhhgWaQagaESsay.......
                   V+SmL+ LPY+LQ++g++++ + g ++++h+gW+Qa+a+S+ y+++++  
     ee24251   204 VGSMLPGLPYhLQGSGsgpANHAG-GAGAHPGWPQASADSPPYgsgggaa 252  

                   ........NagSPHpPsGPRFsYShSPPvangssRD.gaY..........
                   +++  ++++agS +  ++ RF+YS+SPP+ang++R++g+Y   ++++ ++
     ee24251   253 gggaagpgGAGSAAAHVSARFPYSPSPPMANGAAREpGGYaaagsggagg 302  

                   ...qsPLlLgggGRaeQYGnaL..vRsLnGSY..........sSPYaaYv
                    +++++ l + gGR  QY+  L+ +R+LnG+Y+++++++++++SPY +Yv
     ee24251   303 vsgGGSSLAAMGGREPQYS-SLsaARPLNGTYhhhhhhhhhhPSPYSPYV 351  

                   sPdlgpaWtAGPFdsSmLHsLQgRq.aplpg.RrssiEfL<-*
                   ++ l+paW+AGPF+  +LHsLQ+R++aplp++R++s+++L   
     ee24251   352 GAPLTPAWPAGPFETPVLHSLQSRAgAPLPVpRGPSADLL    391  

PF05349.3.fs: domain 1 of 2, from 157 to 251: score 104.7, E = 9.3e-32
                   *->MYqsLAlaaNhGPsgYdhdtGnFmHSa.......tAASSPVYVPTTR
                      MYq+LA  +++GP++Yd+ +G+F HSa        AASSPVYVPTTR
     ee24251   157    MYQTLAALSSQGPAAYDGAPGGFVHSAaaaaaaaAAASSPVYVPTTR 203  

                   VpSmLqsLPY.LQtcg...ssQqghHlsnhhgWaQagaESsayNagSPH<
                   V+SmL+ LPY+LQ++g++++ + g ++++h+gW+Qa+a+S+ y++g+++ 
     ee24251   204 VGSMLPGLPYhLQGSGsgpANHAG-GAGAHPGWPQASADSPPYGSGGGA  251  

                   -*
                     
     ee24251     -    -    

PF05349.3.fs: domain 2 of 2, from 261 to 391: score 77.8, E = 1.4e-23
                   *->NagSPHpPsGPRFsYShSPPvangssRD.gaY.............qs
                      +agS +  ++ RF+YS+SPP+ang++R++g+Y   ++++ ++ ++++
     ee24251   261    GAGSAAAHVSARFPYSPSPPMANGAAREpGGYaaagsggaggvsgGG 307  

                   PLlLgggGRaeQYGnaL..vRsLnGSY..........sSPYaaYvsPdlg
                   + l + gGR  QY+  L+ +R+LnG+Y+++++++++++SPY +Yv++ l+
     ee24251   308 SSLAAMGGREPQYS-SLsaARPLNGTYhhhhhhhhhhPSPYSPYVGAPLT 356  

                   paWtAGPFdsSmLHsLQgRq.aplpg.RrssiEfL<-*
                   paW+AGPF+  +LHsLQ+R++aplp++R++s+++L   
     ee24251   357 PAWPAGPFETPVLHSLQSRAgAPLPVpRGPSADLL    391  

PF00320.17.ls: domain 1 of 2, from 400 to 434: score 68.8, E = 1.6e-17
                   *->CsnCgttkTplWRrgpdGnrtLCNACGLyykkhgvk<-*
                      C+nCg+++TplWRr++ G++ LCNACGLy k++g+    
     ee24251   400    CVNCGSIQTPLWRRDGTGHY-LCNACGLYSKMNGLS    434  

PF00320.17.fs: domain 1 of 2, from 400 to 434: score 66.8, E = 8e-19
                   *->CsnCgttkTplWRrgpdGnrtLCNACGLyykkhgvk<-*
                      C+nCg+++TplWRr++ G++ LCNACGLy k++g+    
     ee24251   400    CVNCGSIQTPLWRRDGTGHY-LCNACGLYSKMNGLS    434  

PF00320.17.fs: domain 2 of 2, from 454 to 488: score 75.0, E = 3.1e-21
                   *->CsnCgttkTplWRrgpdGnrtLCNACGLyykkhgvk<-*
                      C+nC+tt+T+lWRr+ +G++ +CNACGLy k+hgv+   
     ee24251   454    CANCHTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP    488  

PF00320.17.ls: domain 2 of 2, from 454 to 488: score 77.0, E = 5.4e-20
                   *->CsnCgttkTplWRrgpdGnrtLCNACGLyykkhgvk<-*
                      C+nC+tt+T+lWRr+ +G++ +CNACGLy k+hgv+   
     ee24251   454    CANCHTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP    488  

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