hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-13262451/chunk_1/iprscan-20090525-13262451.nocrc
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Query sequence: ee24251
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00401                                                 164.4    1.1e-44   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00401    1/2     394   445 ..     1    54 []    68.8  6.9e-16
SM00401    2/2     448   498 ..     1    54 []    95.6  5.7e-24

Alignments of top-scoring domains:
SM00401: domain 1 of 2, from 394 to 445: score 68.8, E = 6.9e-16
                   *->kgsgrrCsnCgtttTplWRrgpsGnqktLCNACGLyykkhgvkkrpl
                       ++ r+C nCg+ +TplWRr+++G   +LCNACGLy k++g  ++ +
     ee24251   394    LSESRECVNCGSIQTPLWRRDGTG--HYLCNACGLYSKMNGLSRPLI 438  

                   slkkdgi<-*
                   + +k ++   
     ee24251   439 KPQKRVP    445  

SM00401: domain 2 of 2, from 448 to 498: score 95.6, E = 5.7e-24
                   *->kgsgrrCsnCgtttTplWRrgpsGnqktLCNACGLyykkhgvkkrpl
                      ++ g +C+nC+tttT+lWRr+ +G   ++CNACGLy k+hgv  rpl
     ee24251   448    RRLGLSCANCHTTTTTLWRRNAEG--EPVCNACGLYMKLHGV-PRPL 491  

                   slkkdgi<-*
                    +kk+gi   
     ee24251   492 AMKKEGI    498  

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