hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-04220695/chunk_1/iprscan-20080808-04220695.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef00431 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00194 917.5 2.3e-271 2 SM00060 395.2 3.9e-114 8 SM00404 323.6 1.3e-92 2 SM00409 147.8 1.2e-39 3 SM00408 145.3 6.3e-39 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/3 59 145 .. 1 58 [] 45.8 5.5e-09 SM00408 1/3 65 134 .. 1 56 [] 56.7 3e-12 SM00409 2/3 161 246 .. 1 58 [] 47.3 2e-09 SM00408 2/3 167 234 .. 1 56 [] 58.9 6.7e-13 SM00409 3/3 258 336 .. 1 58 [] 54.6 1.3e-11 SM00408 3/3 264 325 .. 1 56 [] 29.7 0.00039 SM00060 1/8 339 418 .. 1 69 [] 63.4 2.8e-14 SM00060 2/8 434 517 .. 1 69 [] 52.6 5e-11 SM00060 3/8 532 611 .. 1 69 [] 53.2 3.4e-11 SM00060 4/8 626 713 .. 1 69 [] 49.2 5.5e-10 SM00060 5/8 729 817 .. 1 69 [] 50.9 1.6e-10 SM00060 6/8 832 912 .. 1 69 [] 46.1 4.7e-09 SM00060 7/8 927 1008 .. 1 69 [] 60.2 2.6e-13 SM00060 8/8 1023 1099 .. 1 69 [] 19.5 0.48 SM00194 1/2 1362 1620 .. 1 308 [] 473.6 9.3e-138 SM00404 1/2 1516 1617 .. 1 92 [] 162.2 5.1e-44 SM00194 2/2 1649 1911 .. 1 308 [] 443.9 8.5e-129 SM00404 2/2 1805 1908 .. 1 92 [] 161.4 9.2e-44 Alignments of top-scoring domains: SM00409: domain 1 of 3, from 59 to 145: score 45.8, E = 5.5e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++t+ G+ +++ C+a++ ++++itW++++++ ++++ ++ ef00431 59 PEdQTGLSGGVASFVCqATgepkpRITWMkkgkkvssqrfeviefdd 105 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++ L+I++++++ +++Y C+at++ g++ +++L+Vl ef00431 106 gagsvLRIqPLRVQRD--EAIYECTATnsLGEINT--SAKLSVL 145 SM00408: domain 1 of 3, from 65 to 134: score 56.7, E = 3e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL l+G+ +++ C a+g p p ItW k+gk++++++ + + +++ gs L ef00431 65 LSGGVASFVCQATGEPKPRITWMKkGKKVSsqrfeviefddgAGSVL 111 tiknvs.leDsGlYtCvArNsvg<-* +i++ + D+ +Y+C+A+Ns g ef00431 112 RIQPLRvQRDEAIYECTATNSLG 134 SM00409: domain 2 of 3, from 161 to 246: score 47.3, E = 2e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+ +v ++t+ C a ++++++i+W+++ + ++ +++++ ++ ef00431 161 PQlKVVEKARTATMLCaAGgnpdpEISWFkdflpvdpatsngrikql 207 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ L+I++ +++D+ G Y C+at+++g+ +s +++L+V+ ef00431 208 rsgaLQIeSSEESDQ---GKYECVATnsAGTRYS-APANLYVR 246 SM00408: domain 2 of 3, from 167 to 234: score 58.9, E = 6.7e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + +++t+ C a g+p+p+I+W+k+ p+++ +++++ ++ ++ L+ ef00431 167 EKARTATMLCAAGGNPDPEISWFKdFLPVDpatsngrikqlRSGALQ 213 iknvsleDsGlYtCvArNsvg<-* i++ +++D G+Y+CvA+Ns+g ef00431 214 IESSEESDQGKYECVATNSAG 234 SM00409: domain 3 of 3, from 258 to 336: score 54.6, E = 1.3e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++v++G+sv+LtC a + + ++++W+ + ++ + + +++ ef00431 258 PSsQEVMPGGSVNLTCvAVgapmpYVKWMmgaeeltkedempvgrnv 304 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+++nv ++ ++YtC+a ++ g++++ ++++tV+ ef00431 305 LELsNVVRS-----ANYTCVAIssLGMIEA--TAQVTVK 336 SM00408: domain 3 of 3, from 264 to 325: score 29.7, E = 0.00039 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv +G+sV LtC a g+p p ++W + ++l ++++ + +++ L+++nv ef00431 264 MPGGSVNLTCVAVGAPMPYVKWMMgAEELTkedempvGRNVLELSNV 310 sleDsGlYtCvArNsvg<-* + s +YtCvA +s g ef00431 311 VR--SANYTCVAISSLG 325 SM00060: domain 1 of 8, from 339 to 418: score 63.4, E = 2.8e-14 *->PgpPsnptelrvtdvtststsdltsvtlsWepP....ivgYr..... P pP + l+vt++t+t svtl+W+ +++++++Y + + ef00431 339 PKPPID---LVVTETTAT------SVTLTWDSGnsepVTYYGiqyra 376 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- +++++ ++++++ +++y + gL+P +eY frV Avn+ G+g ef00431 377 agtegpfqevdgvattrYSIGGLSPF----SEYAFRVLAVNS--IGRG 418 * ef00431 - - SM00060: domain 2 of 8, from 434 to 517: score 52.6, E = 5e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY +pP++ ++++ +++ ++ ++WepP+++++ +++v+Y ef00431 434 SSPPRR---VQARMLSAS------TMLVQWEPPeepnglvrgyRVYY 471 r....................ytltgLkPgaepwteYefrVrAvngndaG +++++++++ + + +++ + t+ L Pg +Y+ rV A+++ +G ef00431 472 TpdsrrppnawhkhntdagllTTVGSLLPG----ITYSLRVLAFTA--VG 515 eg<-* g ef00431 516 DG 517 SM00060: domain 3 of 8, from 532 to 611: score 53.2, E = 3.4e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP...ivgYr..... P P + ++++ ++t ++lsW pP + i+ Y+ + + ef00431 532 PAQPAD---FQAEVESDT------RIQLSWLlPPqerIIMYElvywa 569 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ +++ +++++ytl++LkP+ t Y+f+++A+++ G g ef00431 570 aededqqhkvtfdptssYTLEDLKPD----TLYRFQLAARSD--MGVG 611 * ef00431 - - SM00060: domain 4 of 8, from 626 to 713: score 49.2, E = 5.5e-10 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P++P+ + ++ +st +v++sW pP+ ++ ++ i++Y++ ef00431 626 PSAPPQK--VMCVSMGST------TVRVSWVPPpadsrngvITQYSv 664 ........................ytltgLkPgaepwteYefrVrAvngn + ++++++++ ++++ +++ ++ l gL+ + teY+++VrA+++ ef00431 665 ayeavdgedrgrhvvdgisrehssWDLVGLEKW----TEYRVWVRAHTD- 709 daGeg<-* +G+g ef00431 710 -VGPG 713 SM00060: domain 5 of 8, from 729 to 817: score 50.9, E = 1.6e-10 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. gpP+ ++v++ +st v++ W+ P +++ ++ i gY++ ef00431 729 SGPPRK---VEVEPLNST------AVHVYWKLPvpskqhgqIRGYQv 766 ..........................ytltgLkPgaepwteYefrVrAvn + ++ +++++++ + +++ + ++ t++gL+P t+Y+++V+A++ ef00431 767 tyvrlengeprglpiiqdvmlaeaqeTTISGLTPE----TTYSVTVAAYT 812 gndaGeg<-* +G g ef00431 813 T--KGDG 817 SM00060: domain 6 of 8, from 832 to 912: score 46.1, E = 4.7e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... Pg P+ t + + ++ l+W pP++ +++ +gYr + ef00431 832 PGRPTM---MIST-TAMN------TALLQWHPPkelpgeLLGYRlqy 868 ...................ytltgLkPgaepwteYefrVrAvngndaGeg + ++ ++++ + +++++ +t+tgL+ g t+Y fr++A+n+ aG g ef00431 869 cradearpntidfgkddqhFTVTGLHKG----TTYIFRLAAKNR--AGLG 912 <-* ef00431 - - SM00060: domain 7 of 8, from 927 to 1008: score 60.2, E = 2.6e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. g P+n l+vt t++ + +l W+pP + ++ i++Y++ ef00431 927 SGFPQN---LHVTGLTTS------TTELAWDPPvlaerngrIISYTv 964 ...................ytltgLkPgaepwteYefrVrAvngndaGeg + ++ +++++ ++ ++++++tltgLkP+ t+Y ++VrA ++ +G+g ef00431 965 vfrdinsqqelqnittdtrFTLTGLKPD----TTYDIKVRAWTS--KGSG 1008 <-* ef00431 - - SM00060: domain 8 of 8, from 1023 to 1099: score 19.5, E = 0.48 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.........ivgYr +n +rv + +t sv lsWe P+++++ + + Y ef00431 1023 QVFAKN---FRVAAAMKT------SVLLSWEVPdsyksavpfKILYN 1060 ............ytltgLkPgaepwteYefrVrAvngndaGeg<-* ++++++++ + + + +L+P+ teY+f + + ++++G ef00431 1061 gqsvevdghsmrKLIADLQPN----TEYSFVLMNRGSSAGGLQ 1099 SM00194: domain 1 of 2, from 1362 to 1620: score 473.6, E = 9.3e-138 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi ++++E+e+++ ++ +++++nl+ N+ KNRY ++ ef00431 1362 KFSQEYESIDPGQQF----------TWENSNLEVNK--PKNRYA-NV 1395 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT ++yDh+RV+L+++dg +gsDYINAnyidgy++++ayIaTQGPLp+T ef00431 1396 IAYDHSRVILTSIDGV----PGSDYINANYIDGYRKQNAYIATQGPLPET 1441 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty DFWrMVweq+++++VM+t+l+Ek r+KC+qYWP +++t ef00431 1442 MGDFWRMVWEQRTATVVMMTRLEEK--------SRVKCDQYWPARgTETC 1483 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G i+Vtl++++ l+ yt+Rt+ + + g se+r+++++++++ ef00431 1484 GLIQVTLLDTVELA-TYTVRTFALHKSGS--------SEKRELRQFQFMA 1524 WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi WPDhgvPe p+++l+f+r+v+++++ +gP+ ef00431 1525 WPDHGVPEYPTPILAFLRRVKACNPLD-------------------AGPM 1555 vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe vVHCSAGvGRTG+Fi+id++l++++++++vdi++ V +RsqR++mVQTe ef00431 1556 VVHCSAGVGRTGCFIVIDAMLERMKHektVDIYGHVTCMRSQRNYMVQTE 1605 eQYiFlyraileylk<-* +QY+F+++a+le + ef00431 1606 DQYVFIHEALLEAAT 1620 SM00404: domain 1 of 2, from 1516 to 1617: score 162.2, E = 5.1e-44 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +++++++++WpDh gvPe + +il flr+v++ ++ + +P+vV ef00431 1516 ELRQFQFMAWPDH-----GVPEypTPILAFLRRVKAcnpldagPMVV 1557 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAGvGRTG+f++id +l++ +++++vdi++ v +RsqR+ mvqte+Q ef00431 1558 HCSAGVGRTGCFIVIDAMLERmkhektVDIYGHVTCMRSQRNYMVQTEDQ 1607 YlFlyralle<-* Y+F+++alle ef00431 1608 YVFIHEALLE 1617 SM00194: domain 2 of 2, from 1649 to 1911: score 443.9, E = 8.5e-129 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi e Ef+ l + + + + ++ +anlp+N+ KNR +i ef00431 1649 AMELEFKLLASSKAHTS--------RFISANLPCNK--FKNRLV-NI 1684 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT +py+ tRV+L+p+ g egsDYINA++ dgy+++kayIaTQGPL + ef00431 1685 MPYELTRVCLQPIRGV----EGSDYINASFLDGYRQQKAYIATQGPLAES 1730 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty eDFWrM we+++++IVMLt+l E+ greKC+qYWP e+s y ef00431 1731 TEDFWRMLWEHNSTIIVMLTKLREM--------GREKCHQYWPAErSARY 1772 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn + V + e+++p y++R+++vt+ + +++rt++++++t+ ef00431 1773 QYFVVDPMAEYNMP-QYILREFKVTDARD--------GQSRTIRQFQFTD 1813 WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi WP++gvP++ ++++df+ +v+k+++++++ +gPi ef00431 1814 WPEQGVPKTGEGFIDFIGQVHKTKEQFGQ-----------------DGPI 1846 vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe VHCSAGvGRTG+Fi+++i+l++++ ++ vd+f++Vk+lR+qRp mVQTe ef00431 1847 TVHCSAGVGRTGVFITLSIVLERMRYegvVDMFQTVKTLRTQRPAMVQTE 1896 eQYiFlyraileylk<-* +QY+ +yra+leyl ef00431 1897 DQYQLCYRAALEYLG 1911 SM00404: domain 2 of 2, from 1805 to 1908: score 161.4, E = 9.2e-44 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.........Pi t++++++t+Wp++ gvP++++++++f+ +v+k++++ ++++Pi ef00431 1805 TIRQFQFTDWPEQ-----GVPKtgEGFIDFIGQVHKtkeqfgqdgPI 1846 vVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqte VHCSAGvGRTG+f++++i+l++ + ++ vd+f+tvk lR+qRp mvqte ef00431 1847 TVHCSAGVGRTGVFITLSIVLERmryegvVDMFQTVKTLRTQRPAMVQTE 1896 eQYlFlyralle<-* +QY+ +yra le ef00431 1897 DQYQLCYRAALE 1908 //