hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-04290775/chunk_1/iprscan-20080808-04290775.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef00596 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.fs Myosin head (motor domain) 818.4 3.6e-243 2 PF00063.11.ls Myosin head (motor domain) 804.7 4.8e-239 1 PF00612.17.fs IQ calmodulin-binding motif 73.1 8.6e-21 5 PF00612.17.ls IQ calmodulin-binding motif 78.3 2.3e-20 4 PF00788.13.fs Ras association (RalGDS/AF-6) domain 74.0 4.4e-19 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 62.8 1e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00788.13.ls 1/1 1 87 [. 1 97 [] 62.8 1e-15 PF00788.13.fs 1/1 3 87 .. 15 97 .] 74.0 4.4e-19 PF00063.11.fs 1/2 123 646 .. 1 606 [. 697.2 1.1e-206 PF00063.11.ls 1/1 123 960 .. 1 791 [] 804.7 4.8e-239 PF00063.11.fs 2/2 839 960 .. 651 791 .] 121.2 8.2e-36 PF00612.17.ls 1/4 976 996 .. 1 21 [] 17.4 0.047 PF00612.17.ls 2/4 999 1019 .. 1 21 [] 19.3 0.013 PF00612.17.ls 3/4 1031 1051 .. 1 21 [] 21.5 0.0027 PF00612.17.fs 3/5 1031 1051 .. 1 21 [] 19.5 9.6e-05 PF00612.17.ls 4/4 1072 1092 .. 1 21 [] 20.0 0.0077 Alignments of top-scoring domains: PF00788.13.ls: domain 1 of 1, from 1 to 87: score 62.8, E = 1e-15 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++g++ y+ i+++kn+Ta eVi+ l K++l d ++ ef00596 1 SEGTI-----------YCPIPARKNSTAAEVIESLINKLHL--DKTK 34 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.......rsrF yvL E v+e ggee+ +L+++++P+q ++ ++r a +++ +++++rF ef00596 35 CYVLAE---VKEFGGEEW-ILNPTDCPVQRMMLWPRMALenrlsgeDYRF 80 lLrrred<-* lLr+++ ef00596 81 LLREKNL 87 PF00788.13.fs: domain 1 of 1, from 3 to 87: score 74.0, E = 4.4e-19 *->gt.yktilvskntTaeeViralLrKfgldaddpedyvLvEvslvler gt y+ i+++kn+Ta eVi+ l K++l d ++ yvL E v+e ef00596 3 GTiYCPIPARKNSTAAEVIESLINKLHL--DKTKCYVLAE---VKEF 44 ggeerrvLpddEkPlqiqlqlkrdaq.......rsrFlLrrred<-* ggee+ +L+++++P+q ++ ++r a +++ +++++rFlLr+++ ef00596 45 GGEEW-ILNPTDCPVQRMMLWPRMALenrlsgeDYRFLLREKNL 87 PF00063.11.fs: domain 1 of 2, from 123 to 646: score 697.2, E = 1.1e-206 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl+ L+ lnE ++L+NL+ R++ +IYTY+G +L+++NP+k Lp ef00596 123 FDDLCSLPDLNEKTLLENLRNRFK-HEKIYTYVGSILIVINPFKFLP 168 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY ++ +k+Y + + g+l+PHi+A+Ad AY +Ml++k+NQ+I+isGESG ef00596 169 IYNPKYVKMYDNHQLGKLEPHIYAVADVAYHAMLQRKKNQCIVISGESGS 218 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT +t ++ +l+++s ++ ++ +e+ il + P+LEA ef00596 219 GKTQSTNFLIHHLTALSQKGF-AS-----------GVEQIILGAGPVLEA 256 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT NNNSSRFGKfi++++ +tG++ G+++e+YLLEKSR vy ef00596 257 FGNAKTAHNNNSSRFGKFIQVNYQETGTV----LGAYVEKYLLEKSRLVY 302 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+ ERN+H+FY+LLagas+ e + +++L+ p+ Y+YLnq c ef00596 303 QEHNERNYHVFYYLLAGASEDE-RSAFHLK---QPEEYHYLNQ-D----C 343 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk +tv g D F+ ++ A+ +Gf ++ r+if++l+AILhLGNi k ef00596 344 FTV-EGEDLRHDFERLQLAMEMVGFLPKTRRQIFSLLSAILHLGNIC-YK 391 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG + +++ + + ++e l i++eLL v +e L aL++r+ +t ef00596 392 KKT---YRDD-S---IDICNPEVLPIVSELLEVKEEMLFEALVTRKTVTV 434 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ e+ p +A R+++AK +Ys+LFdWiV +iN aL + ef00596 435 -----GEKLILPYKLAEAVTVRNSMAKSLYSALFDWIVFRINHALLNSK- 478 asdSrGGqaaegdDTVSITVVdlPraaldktasf....IGvLDIyGFEIF d ++++++ +IGvLDI+GFE ef00596 479 ----------------------------DLEHNTktlsIGVLDIFGFEDY 500 aekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDn e+NSFEQ+cIN++NE+LQ +FN+h+FklEQEEY +EgI W +Idy +Dn ef00596 501 -ENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDY-IDN 548 qacidLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlth ci+LI k kP G+l lLDEe++fP+at qt+ldK +++++++ + ef00596 549 TCCINLISK-KPTGLLHLLDEESNFPQATNQTLLDKFKHQHEDNSY--IE 595 FAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis F ++ +FiikHYAG+V Y + +f eKN D +d ++ ef00596 596 F-PAV----------MEPAFIIKHYAGKVKYGVKDFREKNTDHMRPDIVA 634 llksSsdepllae<-* ll+sS++ ++++ ef00596 635 LLRSSKN-AFISG 646 PF00063.11.ls: domain 1 of 1, from 123 to 960: score 804.7, E = 4.8e-239 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl+ L+ lnE ++L+NL+ R++ +IYTY+G +L+++NP+k Lp ef00596 123 FDDLCSLPDLNEKTLLENLRNRFK-HEKIYTYVGSILIVINPFKFLP 168 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY ++ +k+Y + + g+l+PHi+A+Ad AY +Ml++k+NQ+I+isGESG ef00596 169 IYNPKYVKMYDNHQLGKLEPHIYAVADVAYHAMLQRKKNQCIVISGESGS 218 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT +t ++ +l+++s ++ ++ +e+ il + P+LEA ef00596 219 GKTQSTNFLIHHLTALSQKGF-AS-----------GVEQIILGAGPVLEA 256 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT NNNSSRFGKfi++++ +tG++ G+++e+YLLEKSR vy ef00596 257 FGNAKTAHNNNSSRFGKFIQVNYQETGTV----LGAYVEKYLLEKSRLVY 302 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+ ERN+H+FY+LLagas+ e + +++L+ p+ Y+YLnq c ef00596 303 QEHNERNYHVFYYLLAGASEDE-RSAFHLK---QPEEYHYLNQ-D----C 343 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk +tv g D F+ ++ A+ +Gf ++ r+if++l+AILhLGNi k ef00596 344 FTV-EGEDLRHDFERLQLAMEMVGFLPKTRRQIFSLLSAILHLGNIC-YK 391 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG + +++ + + ++e l i++eLL v +e L aL++r+ +t ef00596 392 KKT---YRDD-S---IDICNPEVLPIVSELLEVKEEMLFEALVTRKTVTV 434 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ e+ p +A R+++AK +Ys+LFdWiV +iN aL + ef00596 435 -----GEKLILPYKLAEAVTVRNSMAKSLYSALFDWIVFRINHALLNSK- 478 asdSrGGqaaegdDTVSITVVdlPraaldktasf.IGvLDIyGFEIFaek + + t +IGvLDI+GFE e+ ef00596 479 -------------------------DLEHNTKTLsIGVLDIFGFEDY-EN 502 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac NSFEQ+cIN++NE+LQ +FN+h+FklEQEEY +EgI W +Idy +Dn c ef00596 503 NSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDY-IDNTCC 551 idLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAq i+LI k kP G+l lLDEe++fP+at qt+ldK +++++++ + F ef00596 552 INLISK-KPTGLLHLLDEESNFPQATNQTLLDKFKHQHEDNSY--IEF-P 597 kpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllk ++ +FiikHYAG+V Y + +f eKN D +d ++ll+ ef00596 598 AV----------MEPAFIIKHYAGKVKYGVKDFREKNTDHMRPDIVALLR 637 sSsdepllaeLFpeeel................................. sS++ ++++ + + + + ++ ++++ +++++++ ef00596 638 SSKN-AFISGMIGIDPVavfrwailrafframvafreagkrnihrktghd 686 .................................................. ++ + ++ ++ + +++ ++++ + ++ ++++ + ++++++++ ++ ef00596 687 dtapcailksmdsfsflqhpvhqrsleilqrckeekysitrknprtplsd 736 .................................................. ++ + ++++++++ + +++++ ++++ +++++ ++++ +++++ ef00596 737 lqgmnalneknqhdtfdiawngrtgirqsrlssgtslldkdgifanstss 786 ................................seAaNltlkapdfeadfd + ++ ++ +++++ ++++ +++ + ++ +lt ef00596 787 kllerahgiltrnknfkskpalpkhllevnslKHLTRLT----------- 825 eeeaaaksaklgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnln + + ++ kkk++ + ++qf sl +Lm+tL + + ef00596 826 ------LQDRITKSLLHLHKKKKP-PSISAQFQASLSKLMETLGQA---E 865 PHfvRCIKPNekKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitf P+fv CI+ N +K + F++ lVl Qlr+ G+LE ++Rir+ G+++ + f ef00596 866 PYFVKCIRSNAEKLPLRFSDVLVLRQLRYTGMLE-TVRIRQSGYSSKYSF 914 deFlqRYrlLapktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeey ++F++ + +L p+++ +k +++ + + nl+++ y ef00596 915 QDFVSHFHVLLPRNI---------IPSKFNIQDFFRKI-----NLNPDNY 950 rfGkTKiFfR<-* ++GkT +F++ ef00596 951 QVGKTMVFLK 960 PF00063.11.fs: domain 2 of 2, from 839 to 960: score 121.2, E = 8.2e-36 *->kkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag kkk++ + ++qf sl +Lm+tL + +P+fv CI+ N +K + ef00596 839 KKKKP-PSISAQFQASLSKLMETLGQA---EPYFVKCIRSNAEKLPL 881 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp F++ lVl Qlr+ G+LE ++Rir+ G+++ + f++F++ + +L p+++ ef00596 882 RFSDVLVLRQLRYTGMLE-TVRIRQSGYSSKYSFQDFVSHFHVLLPRNI- 929 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* +k +++ + + nl+++ y++GkT +F++ ef00596 930 --------IPSKFNIQDFFRKI-----NLNPDNYQVGKTMVFLK 960 PF00612.17.ls: domain 1 of 4, from 976 to 996: score 17.4, E = 0.047 *->rraaikIQaawRGylaRkryk<-* r +i++Q+++R l+R+++ ef00596 976 LRRIILLQRWFRVLLCRQHFL 996 PF00612.17.ls: domain 2 of 4, from 999 to 1019: score 19.3, E = 0.013 *->rraaikIQaawRGylaRkryk<-* r+a ++IQ++wR yl k+ + ef00596 999 RQASVIIQRFWRNYLNQKQVR 1019 PF00612.17.ls: domain 3 of 4, from 1031 to 1051: score 21.5, E = 0.0027 *->rraaikIQaawRGylaRkryk<-* aa ++Qa wR++l R+ry ef00596 1031 ASAAALLQASWRAHLERQRYL 1051 PF00612.17.fs: domain 3 of 5, from 1031 to 1051: score 19.5, E = 9.6e-05 *->rraaikIQaawRGylaRkryk<-* aa ++Qa wR++l R+ry ef00596 1031 ASAAALLQASWRAHLERQRYL 1051 PF00612.17.ls: domain 4 of 4, from 1072 to 1092: score 20.0, E = 0.0077 *->rraaikIQaawRGylaRkryk<-* + aai+IQa+w++y+ kry+ ef00596 1072 HMAAICIQARWKAYRESKRYQ 1092 //