hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-04290775/chunk_1/iprscan-20080808-04290775.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef00596 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1102.1 0 1 SM00314 83.8 2.1e-20 1 SM00015 66.9 2.5e-15 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00314 1/1 1 87 [. 1 102 [] 83.8 2.1e-20 SM00242 1/1 115 973 .. 1 771 [] 1102.1 0 SM00015 1/4 974 996 .. 1 23 [] 14.6 7.7 SM00015 2/4 997 1019 .. 1 23 [] 15.4 6.2 SM00015 3/4 1029 1051 .. 1 23 [] 21.6 0.11 SM00015 4/4 1070 1092 .. 1 23 [] 15.3 6.5 Alignments of top-scoring domains: SM00314: domain 1 of 1, from 1 to 87: score 83.8, E = 2.1e-20 *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd + +g y+ + ++k++Ta++Vi+ l++k+hl++ ef00596 1 ----------S-----EGTIYCPIPARKNSTAAEVIESLINKLHLDK 32 edpeeYvLvevlpsggkErvLlddenPlqlqklwprda.ks.prqsslrF ++YvL ev++ gg+E++L+++++P+q ++lwpr+a +++++++++rF ef00596 33 --TKCYVLAEVKEFGGEEWILNPTDCPVQRMMLWPRMAlENrLSGEDYRF 80 vLrkrdd<-* +Lr+++ ef00596 81 LLREKNL 87 SM00242: domain 1 of 1, from 115 to 973: score 1102.1, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav p++++ +D++ L++LnE ++l+NL+ R++ +IYTY G++L+++ ef00596 115 LPQPQQKDFDDLCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIVI 161 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NP+k+l piY++ ++k+Y + ++g+l PH++A+AD AY++Ml++ ef00596 162 NPFKFL-PIYNPKYVKMYD------NHQLGKLEPHIYAVADVAYHAMLQR 204 keNQsIiISGESGAGKTEatKkimqYLAavsg..svesvedqiLesNPiL k+NQ+I+ISGESG+GKT +t +++ +L+a+s+++ +++ve+ iL + P+L ef00596 205 KKNQCIVISGESGSGKTQSTNFLIHHLTALSQkgFASGVEQIILGAGPVL 254 EAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQa EAFGNAKT +NnNSSRFGKfi++++ e+G++ GA +e YLLEKSR V+Q ef00596 255 EAFGNAKTAHNNNSSRFGKFIQVNYQETGTVLGAYVEKYLLEKSRLVYQE 304 kgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankr +ERNYH+FY+LLaGase++++ ++L++ pe+Y+YLnq ef00596 305 HNERNYHVFYYLLAGASEDERSAFHLKQ----PEEYHYLNQ--------- 341 yssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILH +c+tv+g D ++F++ ++ Am+ +Gf + ++IF++l+AILH ef00596 342 ---DCFTVEGEDLRHDFER----LQLAMEMVGFLPKTRRQIFSLLSAILH 384 LGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkR LGNi ++++ + ++++ ++ ++e+l +++eLL+v++e L +aL++R ef00596 385 LGNICYKKKT--YRDDSI---DICNPEVLPIVSELLEVKEEMLFEALVTR 429 kiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl.. k++t ge + + p+++ +Av R+++AK +Ys LFdW+V rIN +l + ef00596 430 KTVTVGE---KLILPYKLAEAVTVRNSMAKSLYSALFDWIVFRINHALln 476 ........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvF +++ ++++++++IGVLDI+GFE e+NSFEQfCIN+aNE+LQ +Fnqh+F ef00596 477 skdlehntKTLSIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIF 526 KlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeCl KlEQEEY EGI+W +Id++ DN ci+LI kK P G+l lLDEe++ ef00596 527 KLEQEEYRTEGISWHNIDYI--DNTCCINLISKK---PTGLLHLLDEESN 571 fHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrt f P++T qt+l+K +++h++++ ++ p +++ ef00596 572 F---PQATNQTLLDKF-----KHQHEDNSYIEFP-----------AVMEP 602 aFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeea aFiikHYAG+V Y v +F+eKN D ++d+++Ll+sSkn +i + ++ ef00596 603 AFIIKHYAGKVKYGVKDFREKNTDHMRPDIVALLRSSKNAFISGMIGIDP 652 dqsssaakekss.ggagksrkagrrepskg.................... + +++a + +++ r+ag +++ +++++++++ + ++ ef00596 653 VAVFRWAILRAFfRAMVAFREAG------Krnihrktghddtapcailks 696 .................................................. ++ + +++ ++++ + ++ ++++ + ++++++++ ++ ++ + +++ ef00596 697 mdsfsflqhpvhqrsleilqrckeekysitrknprtplsdlqgmnalnek 746 .................................................. +++++ + +++++ ++++ +++++ ++++ ++++++ ++ ++ ef00596 747 nqhdtfdiawngrtgirqsrlssgtslldkdgifanstsskllerahgil 796 ..................................t....i.sskkrppTv +++++ ++++ +++ + ++ ++ ++ + +++ t++ + ++kk+pp++ ef00596 797 trnknfkskpalpkhllevnslkhltrltlqdriTksllHlHKKKKPPSI 846 GsqFk.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylG ++qF+ sL++LmetL + +P+F+ CI++N eK+p F + lVl+QLry G ef00596 847 SAQFQaSLSKLMETLGQAEPYFVKCIRSNAEKLPLRFSDVLVLRQLRYTG 896 vLEniRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakk +LE++RIR+ G++++++f++F+ ++ vLlp ++ p k ef00596 897 MLETVRIRQSGYSSKYSFQDFVSHFHVLLPRNIIP------------SKF 934 acealLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* + + + + + l+++ yq+GkT+vFl+ + ++L +l + ef00596 935 NIQDFFRKIN-------LNPDNYQVGKTMVFLK-EQERQHLQDLLHQ 973 SM00015: domain 1 of 4, from 974 to 996: score 14.6, E = 7.7 *->rleraAiiIQaawRGylaRkryk<-* ++ r +i++Q+++R l+R+++ ef00596 974 EVLRRIILLQRWFRVLLCRQHFL 996 SM00015: domain 2 of 4, from 997 to 1019: score 15.4, E = 6.2 *->rleraAiiIQaawRGylaRkryk<-* l++a +iIQ++wR yl k+++ ef00596 997 HLRQASVIIQRFWRNYLNQKQVR 1019 SM00015: domain 3 of 4, from 1029 to 1051: score 21.6, E = 0.11 *->rleraAiiIQaawRGylaRkryk<-* + +aA ++Qa wR +l R+ry ef00596 1029 VMASAAALLQASWRAHLERQRYL 1051 SM00015: domain 4 of 4, from 1070 to 1092: score 15.3, E = 6.5 *->rleraAiiIQaawRGylaRkryk<-* r++ aAi+IQa+w y+ kry+ ef00596 1070 RRHMAAICIQARWKAYRESKRYQ 1092 //