hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-04361101/chunk_1/iprscan-20080808-04361101.nocrc
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Query sequence: ef00702
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00688.9.fs    TGF-beta propeptide                     136.0    9.3e-38   2
PF00688.9.ls    TGF-beta propeptide                      53.2    8.2e-13   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00688.9.fs      1/2      25   116 ..     1   100 [.    98.0  7.3e-27
PF00688.9.ls      1/1      25   266 ..     1   259 []    53.2  8.2e-13
PF00688.9.fs      2/2     144   201 ..   103   166 ..    38.0  2.9e-10

Alignments of top-scoring domains:
PF00688.9.fs: domain 1 of 2, from 25 to 116: score 98.0, E = 7.3e-27
                   *->clsldlessqkqkrleaiegeiLskLgLkrrPrpskeknphpkepas
                      c +ld+ ++++ kr+eai+g+iLskL+L+++P+ ++e       p++
     ef00702    25    CSTLDMDQFMR-KRIEAIRGQILSKLKLTSPPEDYPE-------PEE 63   

                   vPefmldLYnatseleeekegersascdgpplisdydareasrantvrsF
                   vP++++++Yn+t++l++ek+++r+a+c++++++++y+a+e+ +++++  F
     ef00702    64 VPPEVISIYNSTRDLLQEKASRRAAACERERSDEEYYAKEVYKIDMPPFF 113  

                   vhe<-*
                   ++e   
     ef00702   114 PSE    116  

PF00688.9.ls: domain 1 of 1, from 25 to 266: score 53.2, E = 8.2e-13
                   *->clsldlessqkqkrleaiegeiLskLgLkrrPrpskeknphpkepas
                      c +ld+ ++++ kr+eai+g+iLskL+L+++P+ ++e       p++
     ef00702    25    CSTLDMDQFMR-KRIEAIRGQILSKLKLTSPPEDYPE-------PEE 63   

                   vPefmldLYnatseleeekegersascdgpplisdydareasrantvrsF
                   vP++++++Yn+t++l++ek+++r+a+c++++++++y+a+e+ +++++  F
     ef00702    64 VPPEVISIYNSTRDLLQEKASRRAAACERERSDEEYYAKEVYKIDMPPFF 113  

                   vhees.........................ldkeeste.ephrkrfvFnl
                   ++e + +  ++++++ ++  +++++   + ld++++t  +p+ ++ +F++
     ef00702   114 PSETVcpvvttpsgsvgslcsrqsqvlcgyLDAIPPTFyRPYFRIVRFDV 163  

                   SsipegeeltaLarAELRlyrqdplanrfpawsraeqrielYqvlkpgsd
                   S+++++ ++  L++AE+R++r  +++++    +  eqrielYqv+     
     ef00702   164 SAMEKNASN--LVKAEFRVFR-LQNPKA----RVPEQRIELYQVM----- 201  

                   gsrde.........pstrlLdsrlvsardsgggWlsFDVTpavrrWlknp
                                    r + s ++ +r +                +  +
     ef00702   202 ----FiccccccccCCFRQTLSLSLCHRLEY-------------SGMITA 234  

                   qsnlGlqleveclcgdkapgkhvrpsragligkkgpqqkqPllvtff<-*
                   ++nl l+ +   l +      ++  + ag++++             +   
     ef00702   235 HCNLELLGSNDPLAS-----ASLVNGTAGVHHH----------TRLS    266  

PF00688.9.fs: domain 2 of 2, from 144 to 201: score 38.0, E = 2.9e-10
                   *->ldkeeste.ephrkrfvFnlSsipegeeltaLarAELRlyrqdplan
                      ld++++t  +p+ ++ +F++S+++++ ++  L++AE+R++r  ++++
     ef00702   144    LDAIPPTFyRPYFRIVRFDVSAMEKNASN--LVKAEFRVFR-LQNPK 187  

                   rfpawsraeqrielYqvl<-*
                   +    +  eqrielYqv+   
     ef00702   188 A----RVPEQRIELYQVM    201  

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