hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-04420609/chunk_1/iprscan-20080808-04420609.nocrc
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Query sequence: ef00749
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01851.12.ls Proteasome/cyclosome repeat                    129.1    1.2e-35   6
PF01851.12.fs Proteasome/cyclosome repeat                    119.5    6.6e-35   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01851.12.fs   1/5     414   447 ..     1    38 []    23.5  3.5e-06
PF01851.12.ls   1/6     414   447 ..     1    38 []    25.3   0.0002
PF01851.12.ls   2/6     448   484 ..     1    38 []    33.4  7.4e-07
PF01851.12.fs   2/5     448   484 ..     1    38 []    31.5  1.4e-08
PF01851.12.ls   3/6     485   519 ..     1    38 []    37.2  5.3e-08
PF01851.12.fs   3/5     485   519 ..     1    38 []    35.3    1e-09
PF01851.12.fs   4/5     522   556 ..     1    38 []    11.1    0.018
PF01851.12.ls   4/6     522   556 ..     1    38 []    13.0     0.18
PF01851.12.ls   5/6     694   728 ..     1    38 []     0.0       11
PF01851.12.fs   5/5     729   763 ..     1    38 []    18.3  0.00012
PF01851.12.ls   6/6     729   763 ..     1    38 []    20.2   0.0071

Alignments of top-scoring domains:
PF01851.12.fs: domain 1 of 5, from 414 to 447: score 23.5, E = 3.5e-06
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      +A+++LG+i +++ +   +l +++ +y l+++++++++   
     ef00749   414    SAAASLGMILLWDVDG--GLTQID-KY-LYSSEDYIKS    447  

PF01851.12.ls: domain 1 of 6, from 414 to 447: score 25.3, E = 0.0002
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      +A+++LG+i +++ +   +l +++ +y l+++++++++   
     ef00749   414    SAAASLGMILLWDVDG--GLTQID-KY-LYSSEDYIKS    447  

PF01851.12.ls: domain 2 of 6, from 448 to 484: score 33.4, E = 7.4e-07
                   *->gAilaLGliyaGsgne.dealelLlvpyllsdtsnevra<-*
                      gA+la+G+++ G  ne d+al+lL+ +y + ++sn++r    
     ef00749   448    GALLACGIVNSGVRNEcDPALALLS-DY-VLHNSNTMRL    484  

PF01851.12.fs: domain 2 of 5, from 448 to 484: score 31.5, E = 1.4e-08
                   *->gAilaLGliyaGsgne.dealelLlvpyllsdtsnevra<-*
                      gA+la+G+++ G  ne d+al+lL+ +y + ++sn++r    
     ef00749   448    GALLACGIVNSGVRNEcDPALALLS-DY-VLHNSNTMRL    484  

PF01851.12.ls: domain 3 of 6, from 485 to 519: score 37.2, E = 5.3e-08
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      g+i++LGl+yaGs++e ++l lLl p+ + d+  ++++   
     ef00749   485    GSIFGLGLAYAGSNRE-DVLTLLL-PV-MGDSKSSMEV    519  

PF01851.12.fs: domain 3 of 5, from 485 to 519: score 35.3, E = 1e-09
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      g+i++LGl+yaGs++e ++l lLl p+ + d+  ++++   
     ef00749   485    GSIFGLGLAYAGSNRE-DVLTLLL-PV-MGDSKSSMEV    519  

PF01851.12.fs: domain 4 of 5, from 522 to 556: score 11.1, E = 0.018
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                        +la+G+i  Gs+n  ++++ +l +  + ++s +      
     ef00749   522    VTALACGMIAVGSCNG-DVTSTIL-QT-IMEKSETELK    556  

PF01851.12.ls: domain 4 of 6, from 522 to 556: score 13.0, E = 0.18
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                        +la+G+i  Gs+n  ++++ +l +  + ++s +      
     ef00749   522    VTALACGMIAVGSCNG-DVTSTIL-QT-IMEKSETELK    556  

PF01851.12.ls: domain 5 of 6, from 694 to 728: score 0.0, E = 11
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      +  laL li   +++   +l+ L+ ++  +d + ev+    
     ef00749   694    AVPLALALISVSNPRL-NILDTLS-KF-SHDADPEVSY    728  

PF01851.12.fs: domain 5 of 5, from 729 to 763: score 18.3, E = 0.00012
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      ++i+a+G+++ G++n+ ++ ++L+ ++ ++++ ++      
     ef00749   729    NSIFAMGMVGSGTNNA-RLAAMLR-QL-AQYHAKDPNN    763  

PF01851.12.ls: domain 6 of 6, from 729 to 763: score 20.2, E = 0.0071
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      ++i+a+G+++ G++n+ ++ ++L+ ++ ++++ ++      
     ef00749   729    NSIFAMGMVGSGTNNA-RLAAMLR-QL-AQYHAKDPNN    763  

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