# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oef00878.fasta.nr -Q ef00878.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ef00878, 165 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6821140 sequences Expectation_n fit: rho(ln(x))= 4.8441+/-0.00018; mu= 8.4174+/- 0.010 mean_var=59.7410+/-11.699, 0's: 32 Z-trim: 70 B-trim: 0 in 0/67 Lambda= 0.165935 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089276|dbj|BAD93082.1| transcription terminat ( 165) 1115 274.6 4.2e-72 gi|5733122|gb|AAD49435.1| lodestar protein [Homo s (1162) 758 189.6 1.1e-45 gi|3702846|gb|AAC64044.1| RNA polymerase II termin (1162) 758 189.6 1.1e-45 gi|73920148|sp|Q9UNY4|TTF2_HUMAN Transcription ter (1162) 758 189.6 1.1e-45 gi|114558614|ref|XP_513683.2| PREDICTED: transcrip (1162) 758 189.6 1.1e-45 gi|158255470|dbj|BAF83706.1| unnamed protein produ (1162) 758 189.6 1.1e-45 gi|109014588|ref|XP_001112999.1| PREDICTED: simila (1163) 742 185.8 1.5e-44 gi|109014585|ref|XP_001112974.1| PREDICTED: simila (1170) 742 185.8 1.5e-44 gi|194210929|ref|XP_001917731.1| PREDICTED: transc (1167) 705 177.0 7.1e-42 gi|115545427|gb|AAI22691.1| Transcription terminat (1163) 704 176.7 8.3e-42 gi|194036393|ref|XP_001929392.1| PREDICTED: simila (1166) 702 176.2 1.2e-41 gi|123294596|emb|CAM22071.1| transcription termina ( 955) 696 174.7 2.7e-41 gi|123296350|emb|CAM28175.1| transcription termina ( 956) 696 174.7 2.7e-41 gi|148675685|gb|EDL07632.1| transcription terminat (1138) 696 174.8 3.1e-41 gi|152031718|sp|Q5NC05|TTF2_MOUSE Transcription te (1138) 696 174.8 3.1e-41 gi|56611125|gb|AAH87733.1| Transcription terminati (1138) 696 174.8 3.1e-41 gi|123296349|emb|CAI26225.2| transcription termina (1139) 696 174.8 3.1e-41 gi|149030493|gb|EDL85530.1| transcription terminat (1070) 693 174.1 4.8e-41 gi|126313541|ref|XP_001362697.1| PREDICTED: simila (1151) 673 169.3 1.4e-39 gi|47122916|gb|AAH70581.1| MGC81081 protein [Xenop (1187) 670 168.6 2.4e-39 gi|118083556|ref|XP_416595.2| PREDICTED: similar t (1178) 643 162.1 2.1e-37 gi|47221989|emb|CAG08244.1| unnamed protein produc ( 965) 620 156.6 8.1e-36 gi|83318951|emb|CAJ38813.1| Lodestar protein [Plat (1130) 510 130.3 7.8e-28 gi|83318941|emb|CAJ38808.1| Lodestar protein [Plat (1244) 510 130.3 8.4e-28 gi|115634727|ref|XP_787293.2| PREDICTED: similar t ( 600) 435 112.1 1.2e-22 gi|194182705|gb|EDW96316.1| GE24955 [Drosophila ya (1055) 436 112.5 1.6e-22 gi|190650943|gb|EDV48198.1| GG14296 [Drosophila er (1077) 436 112.5 1.6e-22 gi|21392184|gb|AAM48446.1| RE70645p [Drosophila me ( 835) 430 111.0 3.6e-22 gi|8188|emb|CAA44496.1| lodestar protein [Drosophi ( 974) 430 111.1 4e-22 gi|30581024|sp|P34739|TTF2_DROME Transcription ter (1061) 430 111.1 4.3e-22 gi|194198466|gb|EDX12042.1| GD19959 [Drosophila si (1069) 429 110.9 5.1e-22 gi|194169879|gb|EDW84780.1| GK12953 [Drosophila wi (1069) 427 110.4 7.1e-22 gi|190627837|gb|EDV43361.1| GF18453 [Drosophila an (1056) 420 108.7 2.3e-21 gi|54638762|gb|EAL28164.1| GA15429-PA [Drosophila (1058) 419 108.5 2.7e-21 gi|194102088|gb|EDW24131.1| GL23967 [Drosophila pe (1060) 419 108.5 2.7e-21 gi|194143308|gb|EDW59711.1| GJ10137 [Drosophila vi (1061) 416 107.7 4.4e-21 gi|193895941|gb|EDV94807.1| GH17632 [Drosophila gr (1050) 415 107.5 5.1e-21 gi|193678803|ref|XP_001948361.1| PREDICTED: simila (1133) 415 107.5 5.5e-21 gi|193917023|gb|EDW15890.1| GI22534 [Drosophila mo (1070) 413 107.0 7.3e-21 gi|193654847|ref|XP_001950458.1| PREDICTED: simila (1884) 413 107.2 1.1e-20 gi|167863047|gb|EDS26430.1| transcription terminat ( 989) 407 105.6 1.9e-20 gi|156550287|ref|XP_001603076.1| PREDICTED: simila (1032) 405 105.1 2.7e-20 gi|66519055|ref|XP_393754.2| PREDICTED: similar to ( 954) 404 104.8 3e-20 gi|167866546|gb|EDS29929.1| transcription terminat ( 991) 402 104.4 4.2e-20 gi|193681097|ref|XP_001947753.1| PREDICTED: simila ( 735) 392 101.9 1.8e-19 gi|108877866|gb|EAT42091.1| helicase [Aedes aegypt ( 740) 384 100.0 6.7e-19 gi|156554795|ref|XP_001606060.1| PREDICTED: simila (1053) 378 98.6 2.4e-18 gi|158594834|gb|EDP33412.1| SNF2 family N-terminal (1150) 370 96.8 9.7e-18 gi|115812720|ref|XP_782461.2| PREDICTED: similar t ( 361) 357 93.3 3.3e-17 gi|187028798|emb|CAP32046.1| Hypothetical protein (1077) 362 94.8 3.5e-17 >>gi|62089276|dbj|BAD93082.1| transcription termination (165 aa) initn: 1115 init1: 1115 opt: 1115 Z-score: 1449.7 bits: 274.6 E(): 4.2e-72 Smith-Waterman score: 1115; 100.000% identity (100.000% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMY 10 20 30 40 50 60 70 80 90 100 110 120 ef0087 SLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVIKFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVIKFV 70 80 90 100 110 120 130 140 150 160 ef0087 PVPGGGQGRNMTVSLSWVEQPSALLQEPLSFPSSCEEAPGLQFHA ::::::::::::::::::::::::::::::::::::::::::::: gi|620 PVPGGGQGRNMTVSLSWVEQPSALLQEPLSFPSSCEEAPGLQFHA 130 140 150 160 >>gi|5733122|gb|AAD49435.1| lodestar protein [Homo sapie (1162 aa) initn: 758 init1: 758 opt: 758 Z-score: 975.6 bits: 189.6 E(): 1.1e-45 Smith-Waterman score: 758; 99.130% identity (100.000% similar) in 115 aa overlap (3-117:720-834) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQT .::::::::::::::::::::::::::::: gi|573 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQT 690 700 710 720 730 740 40 50 60 70 80 90 ef0087 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 750 760 770 780 790 800 100 110 120 130 140 150 ef0087 SILTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFP ::::::::::::::::::::::::: gi|573 SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 810 820 830 840 850 860 >>gi|3702846|gb|AAC64044.1| RNA polymerase II terminatio (1162 aa) initn: 758 init1: 758 opt: 758 Z-score: 975.6 bits: 189.6 E(): 1.1e-45 Smith-Waterman score: 758; 99.130% identity (100.000% similar) in 115 aa overlap (3-117:720-834) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQT .::::::::::::::::::::::::::::: gi|370 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQT 690 700 710 720 730 740 40 50 60 70 80 90 ef0087 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|370 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 750 760 770 780 790 800 100 110 120 130 140 150 ef0087 SILTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFP ::::::::::::::::::::::::: gi|370 SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 810 820 830 840 850 860 >>gi|73920148|sp|Q9UNY4|TTF2_HUMAN Transcription termina (1162 aa) initn: 758 init1: 758 opt: 758 Z-score: 975.6 bits: 189.6 E(): 1.1e-45 Smith-Waterman score: 758; 99.130% identity (100.000% similar) in 115 aa overlap (3-117:720-834) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQT .::::::::::::::::::::::::::::: gi|739 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQT 690 700 710 720 730 740 40 50 60 70 80 90 ef0087 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 750 760 770 780 790 800 100 110 120 130 140 150 ef0087 SILTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFP ::::::::::::::::::::::::: gi|739 SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 810 820 830 840 850 860 >>gi|114558614|ref|XP_513683.2| PREDICTED: transcription (1162 aa) initn: 758 init1: 758 opt: 758 Z-score: 975.6 bits: 189.6 E(): 1.1e-45 Smith-Waterman score: 758; 99.130% identity (100.000% similar) in 115 aa overlap (3-117:720-834) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQT .::::::::::::::::::::::::::::: gi|114 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQT 690 700 710 720 730 740 40 50 60 70 80 90 ef0087 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 750 760 770 780 790 800 100 110 120 130 140 150 ef0087 SILTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFP ::::::::::::::::::::::::: gi|114 SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 810 820 830 840 850 860 >>gi|158255470|dbj|BAF83706.1| unnamed protein product [ (1162 aa) initn: 758 init1: 758 opt: 758 Z-score: 975.6 bits: 189.6 E(): 1.1e-45 Smith-Waterman score: 758; 99.130% identity (100.000% similar) in 115 aa overlap (3-117:720-834) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQT .::::::::::::::::::::::::::::: gi|158 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQT 690 700 710 720 730 740 40 50 60 70 80 90 ef0087 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 750 760 770 780 790 800 100 110 120 130 140 150 ef0087 SILTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFP ::::::::::::::::::::::::: gi|158 SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 810 820 830 840 850 860 >>gi|109014588|ref|XP_001112999.1| PREDICTED: similar to (1163 aa) initn: 742 init1: 742 opt: 742 Z-score: 954.9 bits: 185.8 E(): 1.5e-44 Smith-Waterman score: 742; 99.115% identity (100.000% similar) in 113 aa overlap (5-117:723-835) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQTSI ::::::.::::::::::::::::::::::: gi|109 VITTYSLVAKEIPTNKQEAEIPGANLSVERTSTPLLQIAWARIILDEAHNVKNPRVQTSI 700 710 720 730 740 750 40 50 60 70 80 90 ef0087 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSI 760 770 780 790 800 810 100 110 120 130 140 150 ef0087 LTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFPSS ::::::::::::::::::::::: gi|109 LTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLK 820 830 840 850 860 870 >>gi|109014585|ref|XP_001112974.1| PREDICTED: similar to (1170 aa) initn: 742 init1: 742 opt: 742 Z-score: 954.8 bits: 185.8 E(): 1.5e-44 Smith-Waterman score: 742; 99.115% identity (100.000% similar) in 113 aa overlap (5-117:730-842) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQTSI ::::::.::::::::::::::::::::::: gi|109 VITTYSLVAKEIPTNKQEAEIPGANLSVERTSTPLLQIAWARIILDEAHNVKNPRVQTSI 700 710 720 730 740 750 40 50 60 70 80 90 ef0087 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSI 760 770 780 790 800 810 100 110 120 130 140 150 ef0087 LTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFPSS ::::::::::::::::::::::: gi|109 LTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLK 820 830 840 850 860 870 >>gi|194210929|ref|XP_001917731.1| PREDICTED: transcript (1167 aa) initn: 705 init1: 705 opt: 705 Z-score: 907.0 bits: 177.0 E(): 7.1e-42 Smith-Waterman score: 705; 94.643% identity (99.107% similar) in 112 aa overlap (6-117:728-839) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQTSIA :::::::.:::::::::::::::::::::: gi|194 ITTYSLLAKEIPTRKQEGETPGANLRVERISTPLLRIVWARIILDEAHNVKNPRVQTSIA 700 710 720 730 740 750 40 50 60 70 80 90 ef0087 VCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSIL :::::: ::::::::::::::::::::::::::::::::.::.::::::::::::::::: gi|194 VCKLQAHARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFSLWKSQVDNGSKKGGERLSIL 760 770 780 790 800 810 100 110 120 130 140 150 ef0087 TKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFPSSC :::::::::::::::::.:::. gi|194 TKSLLLRRTKDQLDSTGKPLVMLPQRKFQLHHLKLSEDEETVYSVLFASSRSALQSYLTR 820 830 840 850 860 870 >>gi|115545427|gb|AAI22691.1| Transcription termination (1163 aa) initn: 702 init1: 702 opt: 704 Z-score: 905.7 bits: 176.7 E(): 8.3e-42 Smith-Waterman score: 704; 88.696% identity (99.130% similar) in 115 aa overlap (3-117:721-835) 10 20 30 ef0087 FFQGTSTPLLRIAWARIILDEAHNVKNPRVQT .:::.::::..:::.::::::::::::::: gi|115 DIVITTYSLLAKEIPTAKQDEQIPGANPSVEGTSSPLLRVVWARLILDEAHNVKNPRVQT 700 710 720 730 740 750 40 50 60 70 80 90 ef0087 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL :.::::::: ::::::::::::::::::::::::::::::::.::.:::::::::::::: gi|115 SMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFKLWKSQVDNGSKKGGERL 760 770 780 790 800 810 100 110 120 130 140 150 ef0087 SILTKSLLLRRTKDQLDSTGRPLVIKFVPVPGGGQGRNMTVSLSWVEQPSALLQEPLSFP .:::.:::::::::::::::.:::. gi|115 NILTRSLLLRRTKDQLDSTGKPLVVLPHRKFQLHHLKLSEDEETVYSVLFARSRLALQYY 820 830 840 850 860 870 165 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 04:53:10 2008 done: Fri Aug 8 04:56:05 2008 Total Scan time: 594.170 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]