hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-04560653/chunk_1/iprscan-20080808-04560653.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ef00878
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00176.13.fs SNF2 family N-terminal domain                  101.7    1.9e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00176.13.fs   1/1       9   110 ..   141   255 ..   101.7  1.9e-27

Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 9 to 110: score 101.7, E = 1.9e-27
                   *->LkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTG
                      L    i w ++ilDE+ H++KN++ ++  s a++kl  a  R+  TG
     ef00878     9    LLR--IAWARIILDEA-HNVKNPRVQT--SIAVCKLQ-ACARWAVTG 49   

                   TPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsa
                   TP+QNnL +++sLl+Fl++++F+ +        +++ + +n ++ gg ++
     ef00878    50 TPIQNNLLDMYSLLKFLRCSPFDEF-------NLWRSQVDNGSKKGGERL 92   

                   vLadatefLrykkeveeg<-*
                    +++++++Lr++k+++++   
     ef00878    93 SILTKSLLLRRTKDQLDS    110  

//