hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-05032802/chunk_1/iprscan-20080808-05032802.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef00973 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00053.14.ls Laminin EGF-like (Domains III and V) 613.5 1.7e-181 10 PF00053.14.fs Laminin EGF-like (Domains III and V) 597.8 9.1e-177 11 PF00055.8.fs Laminin N-terminal (Domain VI) 558.3 1.7e-169 1 PF00055.8.ls Laminin N-terminal (Domain VI) 560.2 1.9e-165 1 PF00052.9.ls Laminin B (Domain IV) 248.9 1e-71 1 PF00052.9.fs Laminin B (Domain IV) 247.0 3.6e-71 1 PF07974.3.fs EGF-like domain 52.3 1.3e-13 5 PF07974.3.ls EGF-like domain 51.0 3.6e-12 6 PF00008.17.fs EGF-like domain 31.6 6.1e-08 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00055.8.fs 1/1 125 359 .. 1 264 [] 558.3 1.7e-169 PF00055.8.ls 1/1 125 359 .. 1 264 [] 560.2 1.9e-165 PF00053.14.fs 1/11 361 414 .. 1 59 [] 38.8 1.4e-10 PF00053.14.ls 1/10 361 414 .. 1 59 [] 40.7 4.7e-09 PF00053.14.ls 2/10 417 470 .. 1 59 [] 66.7 7e-17 PF00053.14.fs 2/11 417 470 .. 1 59 [] 64.8 4e-18 PF00053.14.ls 3/10 473 517 .. 1 59 [] 72.8 9.8e-19 PF00053.14.fs 3/11 473 517 .. 1 59 [] 71.1 6e-20 PF00053.14.fs 4/11 520 567 .. 1 59 [] 74.3 7e-21 PF00053.14.ls 4/10 520 567 .. 1 59 [] 76.1 1e-19 PF00052.9.fs 1/1 633 763 .. 1 150 [] 247.0 3.6e-71 PF00052.9.ls 1/1 633 763 .. 1 150 [] 248.9 1e-71 PF00053.14.ls 5/10 799 845 .. 1 59 [] 69.4 1.1e-17 PF00053.14.fs 6/11 799 845 .. 1 59 [] 67.6 6.1e-19 PF00053.14.ls 6/10 848 900 .. 1 59 [] 25.5 5.7e-05 PF00053.14.fs 7/11 848 900 .. 1 59 [] 23.7 3.4e-06 PF00053.14.fs 8/11 903 956 .. 1 59 [] 65.9 1.9e-18 PF00053.14.ls 7/10 903 956 .. 1 59 [] 67.8 3.3e-17 PF00053.14.fs 9/11 959 1007 .. 1 59 [] 65.9 1.9e-18 PF00053.14.ls 8/10 959 1007 .. 1 59 [] 67.8 3.3e-17 PF00053.14.ls 9/10 1010 1055 .. 1 59 [] 70.5 4.9e-18 PF00053.14.fs 10/11 1010 1055 .. 1 59 [] 68.7 2.9e-19 PF00053.14.fs 11/11 1058 1103 .. 1 59 [] 54.5 4e-15 PF00053.14.ls 10/10 1058 1103 .. 1 59 [] 56.2 9.8e-14 Alignments of top-scoring domains: PF00055.8.fs: domain 1 of 1, from 125 to 359: score 558.3, E = 1.7e-169 *->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC C+P+++N+a+n++ ++at+TCG++ PEeyC+++++++ ++K+C ef00973 125 CMPEFVNAAFNVT--VVATNTCGTP-PEEYCVQTGVTG----VTKSC 164 flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn +lCD+++p+ ++H+++fl+d++n+++ ttWWQS+tml+GvqYp++ ef00973 165 HLCDAGQPH------LQHGAAFLTDYNNQAD-TTWWQSQTMLAGVQYPSS 207 VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay +++tL+L+++F+iTYv++kF+ t+RPE+++i++R++++G +WipYqYY++ ef00973 208 INLTLHLGKAFDITYVRLKFH-TSRPESFAIYKRTREDG-PWIPYQYYSG 255 dDsECeatYpgiprrpirtgraeddvlCTSrYSdiePlteGEViFsvLeG + Ce+tY++++r++irtg++e+++lCT+++Sdi+Plt+G+V+Fs+LeG ef00973 256 S---CENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEG 302 RPsadifDpYSprlQewlkaTniRitLtRLhTLGDnLldsSHRelkeLdp RPsa++fD+ Sp+lQew++aT+iR+tL+RL+T+GD++++ dp ef00973 303 RPSAYNFDN-SPVLQEWVTATDIRVTLNRLNTFGDEVFN---------DP 342 evlekYYYAIsDivVGG<-* +vl++YYYAIsD++VGG ef00973 343 KVLKSYYYAISDFAVGG 359 PF00055.8.ls: domain 1 of 1, from 125 to 359: score 560.2, E = 1.9e-165 *->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC C+P+++N+a+n++ ++at+TCG++ PEeyC+++++++ ++K+C ef00973 125 CMPEFVNAAFNVT--VVATNTCGTP-PEEYCVQTGVTG----VTKSC 164 flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn +lCD+++p+ ++H+++fl+d++n+++ ttWWQS+tml+GvqYp++ ef00973 165 HLCDAGQPH------LQHGAAFLTDYNNQAD-TTWWQSQTMLAGVQYPSS 207 VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay +++tL+L+++F+iTYv++kF+ t+RPE+++i++R++++G +WipYqYY++ ef00973 208 INLTLHLGKAFDITYVRLKFH-TSRPESFAIYKRTREDG-PWIPYQYYSG 255 dDsECeatYpgiprrpirtgraeddvlCTSrYSdiePlteGEViFsvLeG + Ce+tY++++r++irtg++e+++lCT+++Sdi+Plt+G+V+Fs+LeG ef00973 256 S---CENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEG 302 RPsadifDpYSprlQewlkaTniRitLtRLhTLGDnLldsSHRelkeLdp RPsa++fD+ Sp+lQew++aT+iR+tL+RL+T+GD++++ dp ef00973 303 RPSAYNFDN-SPVLQEWVTATDIRVTLNRLNTFGDEVFN---------DP 342 evlekYYYAIsDivVGG<-* +vl++YYYAIsD++VGG ef00973 343 KVLKSYYYAISDFAVGG 359 PF00053.14.fs: domain 1 of 11, from 361 to 414: score 38.8, E = 1.4e-10 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C Cn+h+ ++C + +C Ck+n++G +C+ C+p + ef00973 361 CKCNGHA----SECMKNEF----DKLVCN-CKHNTYGVDCEKCLPFF 398 yglpsg....dpgqgC<-* ++p+++ + ++ C ef00973 399 NDRPWRrataESASEC 414 PF00053.14.ls: domain 1 of 10, from 361 to 414: score 40.7, E = 4.7e-09 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C Cn+h+ ++C + +C Ck+n++G +C+ C+p + ef00973 361 CKCNGHA----SECMKNEF----DKLVCN-CKHNTYGVDCEKCLPFF 398 yglpsg....dpgqgC<-* ++p+++ + ++ C ef00973 399 NDRPWRrataESASEC 414 PF00053.14.ls: domain 2 of 10, from 417 to 470: score 66.7, E = 7e-17 *->CdCnphGslsddtCdsddelf..geetGqClkCkpnvtGrrCdrCkp CdCn+++ +C++d+el+++++++G+C +C++n++G +C+rC++ ef00973 417 CDCNGRS----QECYFDPELYrsTGHGGHCTNCQDNTDGAHCERCRE 459 GyyglpsgdpgqgC<-* ++++l ++ + C ef00973 460 NFFRL---GNNEAC 470 PF00053.14.fs: domain 2 of 11, from 417 to 470: score 64.8, E = 4e-18 *->CdCnphGslsddtCdsddelf..geetGqClkCkpnvtGrrCdrCkp CdCn+++ +C++d+el+++++++G+C +C++n++G +C+rC++ ef00973 417 CDCNGRS----QECYFDPELYrsTGHGGHCTNCQDNTDGAHCERCRE 459 GyyglpsgdpgqgC<-* ++++l ++ + C ef00973 460 NFFRL---GNNEAC 470 PF00053.14.ls: domain 3 of 10, from 473 to 517: score 72.8, E = 9.8e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+p+Gsls +Cds G+C+ Ckp+v+G++CdrC+pG+ ef00973 473 CHCSPVGSLS-TQCDS--------YGRCS-CKPGVMGDKCDRCQPGF 509 yglpsgdpgqgC<-* + l + + gC ef00973 510 HSL---TEA-GC 517 PF00053.14.fs: domain 3 of 11, from 473 to 517: score 71.1, E = 6e-20 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+p+Gsls +Cds G+C+ Ckp+v+G++CdrC+pG+ ef00973 473 CHCSPVGSLS-TQCDS--------YGRCS-CKPGVMGDKCDRCQPGF 509 yglpsgdpgqgC<-* + l + + gC ef00973 510 HSL---TEA-GC 517 PF00053.14.fs: domain 4 of 11, from 520 to 567: score 74.3, E = 7e-21 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C C+p Gs d+C+ etG+C+ Ck+nv+G +C+rCkpG+ ef00973 520 CSCDPSGSI--DECNV-------ETGRCV-CKDNVEGFNCERCKPGF 556 yglpsgdpgqgC<-* ++l s ++++gC ef00973 557 FNLES-SNPRGC 567 PF00053.14.ls: domain 4 of 10, from 520 to 567: score 76.1, E = 1e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C C+p Gs d+C+ etG+C+ Ck+nv+G +C+rCkpG+ ef00973 520 CSCDPSGSI--DECNV-------ETGRCV-CKDNVEGFNCERCKPGF 556 yglpsgdpgqgC<-* ++l s ++++gC ef00973 557 FNLES-SNPRGC 567 PF00052.9.fs: domain 1 of 1, from 633 to 763: score 247.0, E = 3.6e-71 *->YWrlPekFLGDkvtaYGGkLkYsvafdgPvegvgstsnseadViLkG Y+++P+kFLG++v++YG++L++s+++d+ ++ t++s++d++L+G ef00973 633 YFIAPAKFLGKQVLSYGQNLSFSFRVDR----RD-TRLSAEDLVLEG 674 nglrlsvplraqgnslQPseervkvtvrlhEtfwKdfqsvpekaatredl +glr+svpl+aqgns+ Pse++vk+++rlhE++ d++++p+ +t++++ ef00973 675 AGLRVSVPLIAQGNSY-PSETTVKYVFRLHEAT--DYPWRPA--LTPFEF 719 lsvLanLtaiLIRATYNsakqaqsrLddVsLeiAvDrpgaqglaEevvAa +++L+nLt+i+IR+TY s++ a++ LddV+L +A rpg++ v+A+ ef00973 720 QKLLNNLTSIKIRGTY-SERSAGY-LDDVTLASA--RPGPG-----VPAT 760 eVE<-* +VE ef00973 761 WVE 763 PF00052.9.ls: domain 1 of 1, from 633 to 763: score 248.9, E = 1e-71 *->YWrlPekFLGDkvtaYGGkLkYsvafdgPvegvgstsnseadViLkG Y+++P+kFLG++v++YG++L++s+++d+ ++ t++s++d++L+G ef00973 633 YFIAPAKFLGKQVLSYGQNLSFSFRVDR----RD-TRLSAEDLVLEG 674 nglrlsvplraqgnslQPseervkvtvrlhEtfwKdfqsvpekaatredl +glr+svpl+aqgns+ Pse++vk+++rlhE++ d++++p+ +t++++ ef00973 675 AGLRVSVPLIAQGNSY-PSETTVKYVFRLHEAT--DYPWRPA--LTPFEF 719 lsvLanLtaiLIRATYNsakqaqsrLddVsLeiAvDrpgaqglaEevvAa +++L+nLt+i+IR+TY s++ a++ LddV+L +A rpg++ v+A+ ef00973 720 QKLLNNLTSIKIRGTY-SERSAGY-LDDVTLASA--RPGPG-----VPAT 760 eVE<-* +VE ef00973 761 WVE 763 PF00053.14.ls: domain 5 of 10, from 799 to 845: score 69.4, E = 1.1e-17 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn+h+ +tCd+ etG+C C++n++G++C+ C +Gy ef00973 799 CACNGHS----ETCDP-------ETGVCN-CRDNTAGPHCEKCSDGY 833 yglpsg.dpgqgC<-* yg+++++++ +C ef00973 834 YGDSTAgTSS-DC 845 PF00053.14.fs: domain 6 of 11, from 799 to 845: score 67.6, E = 6.1e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn+h+ +tCd+ etG+C C++n++G++C+ C +Gy ef00973 799 CACNGHS----ETCDP-------ETGVCN-CRDNTAGPHCEKCSDGY 833 yglpsg.dpgqgC<-* yg+++++++ +C ef00973 834 YGDSTAgTSS-DC 845 PF00053.14.ls: domain 6 of 10, from 848 to 900: score 25.5, E = 5.7e-05 *->CdCnphGslsddtCdsddelf.geetGqClkCkpnvtGrrCdrCkpG C C++ + +C ++ + +C +C ++tG+rC+ C +G ef00973 848 CPCPGGS-----SCAV----VpKTKEVVCTNCPTGTTGKRCELCDDG 885 yyglpsg..dpgqgC<-* y+g+p+g+++p + C ef00973 886 YFGDPLGrnGPVRLC 900 PF00053.14.fs: domain 7 of 11, from 848 to 900: score 23.7, E = 3.4e-06 *->CdCnphGslsddtCdsddelf.geetGqClkCkpnvtGrrCdrCkpG C C++ + +C ++ + +C +C ++tG+rC+ C +G ef00973 848 CPCPGGS-----SCAV----VpKTKEVVCTNCPTGTTGKRCELCDDG 885 yyglpsg..dpgqgC<-* y+g+p+g+++p + C ef00973 886 YFGDPLGrnGPVRLC 900 PF00053.14.fs: domain 8 of 11, from 903 to 956: score 65.9, E = 1.9e-18 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+C+ + ++++ + C++ tG+ClkC +n++G CdrCk+G ef00973 903 CQCSDNIDPNAvGNCNR-------LTGECLKCIYNTAGFYCDRCKDG 942 yyglpsg.dpgqgC<-* ++g+p++++p+ C ef00973 943 FFGNPLApNPADKC 956 PF00053.14.ls: domain 7 of 10, from 903 to 956: score 67.8, E = 3.3e-17 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+C+ + ++++ + C++ tG+ClkC +n++G CdrCk+G ef00973 903 CQCSDNIDPNAvGNCNR-------LTGECLKCIYNTAGFYCDRCKDG 942 yyglpsg.dpgqgC<-* ++g+p++++p+ C ef00973 943 FFGNPLApNPADKC 956 PF00053.14.fs: domain 9 of 11, from 959 to 1007: score 65.9, E = 1.9e-18 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+Cnp G+ ++++C++ +tGqC C+p+vtG++C C pG ef00973 959 CNCNPYGTMKQqSSCNP-------VTGQCE-CLPHVTGQDCGACDPG 997 yyglpsgdpgqgC<-* +y+l ++gqgC ef00973 998 FYNL---QSGQGC 1007 PF00053.14.ls: domain 8 of 10, from 959 to 1007: score 67.8, E = 3.3e-17 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+Cnp G+ ++++C++ +tGqC C+p+vtG++C C pG ef00973 959 CNCNPYGTMKQqSSCNP-------VTGQCE-CLPHVTGQDCGACDPG 997 yyglpsgdpgqgC<-* +y+l ++gqgC ef00973 998 FYNL---QSGQGC 1007 PF00053.14.ls: domain 9 of 10, from 1010 to 1055: score 70.5, E = 4.9e-18 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+ +Gs++ ++Cd +tGqC C+p+ tG++C+rC+ ++ ef00973 1010 CDCHALGSTN-GQCDI-------RTGQCE-CQPGITGQHCERCEVNH 1047 yglpsgdpgqgC<-* +g+ +p+ gC ef00973 1048 FGF---GPE-GC 1055 PF00053.14.fs: domain 10 of 11, from 1010 to 1055: score 68.7, E = 2.9e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+ +Gs++ ++Cd +tGqC C+p+ tG++C+rC+ ++ ef00973 1010 CDCHALGSTN-GQCDI-------RTGQCE-CQPGITGQHCERCEVNH 1047 yglpsgdpgqgC<-* +g+ +p+ gC ef00973 1048 FGF---GPE-GC 1055 PF00053.14.fs: domain 11 of 11, from 1058 to 1103: score 54.5, E = 4e-15 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+p Gsls +C G+C C++++ G rCd+C+++y ef00973 1058 CDCHPEGSLS-LQCKD--------DGRCE-CREGFVGNRCDQCEENY 1094 yglpsgdpgqgC<-* + +++ +++ gC ef00973 1095 F-YNR-SWP-GC 1103 PF00053.14.ls: domain 10 of 10, from 1058 to 1103: score 56.2, E = 9.8e-14 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+p Gsls +C G+C C++++ G rCd+C+++y ef00973 1058 CDCHPEGSLS-LQCKD--------DGRCE-CREGFVGNRCDQCEENY 1094 yglpsgdpgqgC<-* + +++ +++ gC ef00973 1095 F-YNR-SWP-GC 1103 //