hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-05245622/chunk_1/iprscan-20080808-05245622.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef01127 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02806.8.fs Alpha amylase, C-terminal all-beta do 115.9 5.4e-33 1 PF02806.8.ls Alpha amylase, C-terminal all-beta do 117.6 3.2e-32 1 PF02922.8.fs Isoamylase N-terminal domain 99.5 4.5e-30 1 PF02922.8.ls Isoamylase N-terminal domain 101.2 2.8e-27 1 PF00128.14.fs Alpha amylase, catalytic domain 45.5 8.8e-14 1 PF00128.14.ls Alpha amylase, catalytic domain -52.2 0.00026 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02922.8.fs 1/1 127 213 .. 1 111 [] 99.5 4.5e-30 PF02922.8.ls 1/1 127 213 .. 1 111 [] 101.2 2.8e-27 PF00128.14.ls 1/1 257 572 .. 1 463 [] -52.2 0.00026 PF00128.14.fs 1/1 279 340 .. 55 129 .. 45.5 8.8e-14 PF02806.8.fs 1/1 655 750 .. 1 125 [] 115.9 5.4e-33 PF02806.8.ls 1/1 655 750 .. 1 125 [] 117.6 3.2e-32 Alignments of top-scoring domains: PF02922.8.fs: domain 1 of 1, from 127 to 213: score 99.5, E = 4.5e-30 *->pLGAhydpddtvdGevggvnFrvWAPnAerVsLvldfnnggkdwdge ++G+h+ + ++gg ++++WAP+Ae+V L +dfn+ w+++ ef01127 127 SFGVHR---C----ADGGLYCKEWAPGAEGVFLTGDFNG----WNPF 162 ehpmkrsetnrdgGvWelflpgd.nG.pdlkhgsGgvrYkYritgpdape ++p+k + d G Wel++p+++n+++ ++hgs + k it + ef01127 163 SYPYK----KLDYGKWELYIPPKqNKsVLVPHGS---KLKVVITSKS--- 202 eGhrfneiklklDPYA<-* G ei+++++P+A ef01127 203 -G----EILYRISPWA 213 PF02922.8.ls: domain 1 of 1, from 127 to 213: score 101.2, E = 2.8e-27 *->pLGAhydpddtvdGevggvnFrvWAPnAerVsLvldfnnggkdwdge ++G+h+ + ++gg ++++WAP+Ae+V L +dfn+ w+++ ef01127 127 SFGVHR---C----ADGGLYCKEWAPGAEGVFLTGDFNG----WNPF 162 ehpmkrsetnrdgGvWelflpgd.nG.pdlkhgsGgvrYkYritgpdape ++p+k + d G Wel++p+++n+++ ++hgs + k it + ef01127 163 SYPYK----KLDYGKWELYIPPKqNKsVLVPHGS---KLKVVITSKS--- 202 eGhrfneiklklDPYA<-* G ei+++++P+A ef01127 203 -G----EILYRISPWA 213 PF00128.14.ls: domain 1 of 1, from 257 to 572: score -52.2, E = 0.00026 *->qiypdrFewgDpsndpsssyGsaagcrdrePtqgielrkyfGGDlqG i + + + ++ ef01127 257 GISSHEGK---------------------------------VASYKH 270 iidkld.YLkdlGvtaiWlsPifenipntaspqkdstsyhgYdttDYkki + + + +k+lG++ i+l+ i e +a+ + +gY++t++++ ef01127 271 FTCNVLpRIKGLGYNCIQLMAIME----HAYY-----ASFGYQITSFFAA 311 nQGvdpryGtkadfksLidaaharGIKvilDvVpNHtsdehawedvtfqe +ryGt +++++L+d+ah+ GI v+lDvV H+ ef01127 312 ----SSRYGTPEELQELVDTAHSMGIIVLLDVV--HS------------- 342 snkskdnpedygdyyieWfpgklsnpgnpysptnwgshkfdiyfdgsnws +sk+ ++d + f+g ++ ++++s g++ + ef01127 343 -HASKN----SADGLN-MFDG--------TDSCYFHS--------GPRGT 370 dgdengdeyylhlflvgLpDLnteNpeVrneikdwlaklWldkGgelGvD + +++ + + ++eV + ++ ++ Wl++ + +D ef01127 371 HDLWDSRL------------FAYSSWEVLRFLLS-NIRWWLEE---YRFD 404 GFRiDaakHisk.d.........................nggflkeftqe GFR+D + + + ++ +++ +++ ++ + + +++ ++ + ++++ ef01127 405 GFRFDGVTSMLYhHhgvgqgfsgdyseyfglqvdedaltYLMLANHLVHT 454 lkaykesgpevftvGEvwgs.........gdgelargdaytgygeltmlf l p+ t++E ++ + ++ +++g+ g +y+ ++ + ef01127 455 LC------PDSITIAEDVSGmpalcspisQGGG---GFDYRLAMAIP--- 492 dFplfgilqnafrpnkfqgnpqdqaStmkdlknmisgwqsaypnavekav + + l+++++ ++++ m+d++ + + +y + k + ef01127 493 -DKWIQLLKEFKD------EDWN----MGDIVYTL--TNRRYLE---KCI 526 tFvdNHDtpRghgldflsrtggdrsdkAkyrvkklklAyafiltspyGtP + ++HD+ + g+++ +af+l+ ef01127 527 AYAESHDQA---------LVGDKS--------------LAFWLMDA---- 549 vIYyGdEigmtggkgndisdPnnmdnregnpwsdehrdtelyqqikslda ++++ + P ++ + i++ + ef01127 550 -----EMYTNMSVL-----TP--------------FT-----PVIDRGIQ 570 fR<-* ++ ef01127 571 LH 572 PF00128.14.fs: domain 1 of 1, from 279 to 340: score 45.5, E = 8.8e-14 *->LkdlGvtaiWlsPifenipntaspqkdstsyhgYdttDYkkinQGvd +k+lG++ i+l+ i e +a+ + +gY++t++++ ef01127 279 IKGLGYNCIQLMAIME----HAYY-----ASFGYQITSFFAA----S 312 pryGtkadfksLidaaharGIKvilDvV<-* +ryGt +++++L+d+ah+ GI v+lDvV ef01127 313 SRYGTPEELQELVDTAHSMGIIVLLDVV 340 PF02806.8.fs: domain 1 of 1, from 655 to 750: score 115.9, E = 5.4e-33 *->WidadDngnsviAFeRrgdkgnkgddddllvvfNftpvdsredyvrt +++ +++gn++iAFeR g ll++fNf+p++s++dy r+ ef01127 655 YVSEKHEGNKIIAFERA------G----LLFIFNFHPSKSYTDY-RV 690 glPqaGqgktYrdvlglnsDaeeyGGsg.lgnsgctGrkptvvtVteeep g +G +++ vl +sDa+eyGG+ +l++s++ ++ +e + ef01127 691 GTALPG---KFKIVL--DSDAAEYGGHQrLDHSTD-------FF-SEAFE 727 wvdGrkpySwgltltlPplsalvLhlkak<-* + +Gr pyS l +++P++ al+L + ef01127 728 H-NGR-PYS--LLVYIPSRVALILQN--V 750 PF02806.8.ls: domain 1 of 1, from 655 to 750: score 117.6, E = 3.2e-32 *->WidadDngnsviAFeRrgdkgnkgddddllvvfNftpvdsredyvrt +++ +++gn++iAFeR g ll++fNf+p++s++dy r+ ef01127 655 YVSEKHEGNKIIAFERA------G----LLFIFNFHPSKSYTDY-RV 690 glPqaGqgktYrdvlglnsDaeeyGGsg.lgnsgctGrkptvvtVteeep g +G +++ vl +sDa+eyGG+ +l++s++ ++ +e + ef01127 691 GTALPG---KFKIVL--DSDAAEYGGHQrLDHSTD-------FF-SEAFE 727 wvdGrkpySwgltltlPplsalvLhlkak<-* + +Gr pyS l +++P++ al+L + ef01127 728 H-NGR-PYS--LLVYIPSRVALILQN--V 750 //