hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-05245622/chunk_1/iprscan-20080808-05245622.nocrc
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Query sequence: ef01127
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00642                                                 -19.9    1.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00642    1/1     274   620 ..     1   547 []   -19.9  1.5e-06

Alignments of top-scoring domains:
SM00642: domain 1 of 1, from 274 to 620: score -19.9, E = 1.5e-06
                   *->QIypdrFadgngdgnapggrtvnevsndpgcpwgsppdnPtiktsdt
                                                                     
     ef01127     -    ----------------------------------------------- -    

                   nDrqnlkkyfGGDlqGIiekLddfYlkdgneLGvtaiWlsPifespmgdv
                                     + L+   +k+   LG+++i+l+ i e+     
     ef01127   274 ------------------NVLP--RIKG---LGYNCIQLMAIMEHA---- 296  

                   vvggtgfgypsyhGYDisDYyqidpTrfGTmeDFkaLvdaaHarGikvil
                           y++ +GY+i+++++  + r+GT e++++Lvd+aH+ Gi v l
     ef01127   297 --------YYASFGYQITSFFAASS-RYGTPEELQELVDTAHSMGIIVLL 337  

                   DlVfNHtsdehpwFvkqesrksgealyaektgtgdspYkiyyrDwyiwpd
                   D+V  H s                          +s+      D  + +d
     ef01127   338 DVVHSHASK-------------------------NSA------DGLNMFD 356  

                   gkgnayedGkpyppnnwhppcfiasvfggsgsdfrrlnyGtGgawnyqeV
                   g           +++         ++f+                      
     ef01127   357 G-----------TDS---------CYFHS----------------GP--- 367  

                   gdeevdgtrgqyylhgtglFavslPDLNteNptpnksseVreelkdvlrf
                    + +       +++            + +++       eV ++l+  +r+
     ef01127   368 -RGTH------DLWD--------SRLFAYSSW------EVLRFLLSNIRW 396  

                   WldkGgtglGvDGFRlDaakHisKegdalpDlpdeppsvdsgtddpddky
                   Wl+++     +DGFR+D +  +                            
     ef01127   397 WLEEYR----FDGFRFDGVTSM---------------------------- 414  

                   ylghiyttnppdlheflsel...vGEvw......................
                              + h   + +++++ E+++ + +++  ++    ++  ++ 
     ef01127   415 ---------LYHHHGVGQGFsgdYSEYFglqvdedaltylmlanhlvhtl 455  

                   ........................dfvfnfp...........sladLkng
                    +++ +  ++ ++ +   ++ +++ + f++      +++  + l+++k++
     ef01127   456 cpdsitiaedvsgmpalcspisqgGGGFDYRlamaipdkwiqLLKEFKDE 505  

                   .gllaswlgelpsysdanlavtfvdddkalfLgNHDtpRflGgggqisrf
                   ++ +++ +  l + ++ ++  ++ +        +HD+  +    +  + f
     ef01127   506 dWNMGDIVYTLTNRRYLEKCIAYAE--------SHDQALVG---DKSLAF 544  

                   gddsgyDrp..e.n...kalapapeyrkrraklAaallltlpyGtPciI.
                   +     D    ++ +   +  p  + + +  k+   +++ l  G   +++
     ef01127   545 WLM---DAEmyTnMsvlTPFTPVIDRGIQLHKMIRLITHGLG-GEG-YLn 589  

                   YyGdEiGmtggpgngqfnddipdnRdpmpwnsvadispyinldeesngWv
                   + G E+G +        +   + +R+  + +                   
     ef01127   590 FMGNEFGHPE-------WL--DFPRKGNNES------------------- 611  

                   dkcehelyqiiksldafR<-*
                           ++++ + +f+   
     ef01127   612 --------YHYA-RRQFH    620  

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