hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-05381794/chunk_1/iprscan-20080808-05381794.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef01296 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00324.11.fs Amino acid permease 161.0 2.8e-45 3 PF00324.11.ls Amino acid permease 113.3 6.3e-31 1 PF03522.6.fs K-Cl Co-transporter type 1 (KCC1) 75.4 2.8e-20 1 PF03522.6.ls K-Cl Co-transporter type 1 (KCC1) 77.4 4.2e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00324.11.ls 1/1 226 797 .. 1 527 [] 113.3 6.3e-31 PF00324.11.fs 1/3 226 393 .. 1 173 [. 68.0 5.6e-18 PF00324.11.fs 2/3 527 578 .. 237 288 .. 26.8 5.3e-07 PF00324.11.fs 3/3 607 797 .. 330 527 .] 66.2 1.7e-17 PF03522.6.ls 1/1 1054 1083 .. 1 30 [] 77.4 4.2e-20 PF03522.6.fs 1/1 1054 1083 .. 1 30 [] 75.4 2.8e-20 Alignments of top-scoring domains: PF00324.11.ls: domain 1 of 1, from 226 to 797: score 113.3, E = 6.3e-31 *->HvqmialGgviGtGLfvgsgvvlaqaGpaglpllgyliagvviflvm +v + +l +++G+ Lf+++ +v+++aG++++ + ++li++ ++ l++ ef01296 226 GVYLPCLQNIFGVILFLRLTWVVGTAGVLQA-FAIVLICCCCTMLTA 271 lslgEmstngpvvsGsfytyasrflgpslGfatGwnyll.tvYwfswvfv +s+++++tng v +G+ y+++sr lgp++G+a+G+ + l+t++ ++ ef01296 272 ISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLgTTFAAAMYIL 321 ialeltaasiliqfwes.fpdipylwvwgsivdSgpndiRvIgavfivvl a e++ + i+ + ++ +d +++ + +n Rv g+ f+v++ ef01296 322 GAIEIFLVYIVPRAAIFhSDDALKESAA------MLNNMRVYGTAFLVLM 365 liinlvgvKgygeaEfwfalikviaiigfiivgavviillfgggpndg.. +++ ++gv++ ++ f+ + +++i++ + + + ++++p++++ ef01296 366 VLVVFIGVRYVNKFASLFLACVIVSILAIYAGA-----IKSSFAPPHFpv 410 .................................................. ++++ ++++ + +++++ ++ + +++ + ++++ + + ++ ef01296 411 cmlgnrtlssrhidvcsktkeinnmtvpsklwgffcnssqffnatcdeyf 460 ......................ll.fhaigfrylgdpgaifknnfppgfa +++ ++ ++ ++ ++ +++l + +++ + p a + +++ + ef01296 461 vhnnvtsiqgipglasgiitenLWsNYLPKGEIIEKPSAKSSDVLGSLNH 510 pspgtgsFlgflsvfviaaFaFtGielvgiaAgEsknPrKaiPkAilqvv + ++f + i++++ tGi+++ + +g++k+ +K+iP ++++++ ef01296 511 EYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAI 560 writifYi....lsllaigllvpwndpglladsasaFFdCkpdcsaSPfv + + ++Y+++ l+ ++i +v +++ + d++ + + ef01296 561 LTTSFVYLsnvvLFGACIEGVVLRDK---FGDAVKG-------------N 594 iafknlgikglahlinaviLtaaLSaansslysgsRmlyaLArdglaPik ++ l ++ + +i+++ + ++ +a++ sl++++R l+a A+d+++P+ ef01296 595 LVVGTLSWPS-PWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFL 643 kflkkvdksgvPlraillstaisllavavlwliillaslnpaapivfnfl ++++ ++ +g+P a+ll++ai+ l++ l+asl + api + f+ ef01296 644 RVFGHSKANGEPTWALLLTAAIAELGI-------LIASLDLVAPILSMFF 686 laisgliglivwllislshlrfRkafkyqgrsidelpfkaplgpfgvila l + + +l++ l +l +++R+ f+y+ + ++ + ++l+ ++ + ef01296 687 LMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSW 736 laaliiilliqayyaflpvpkgpktwgaadfaalyltvllfiilligykl a+++++++ +y + + +++k wg++ + ++ + + +++l + ef01296 737 YYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPP 786 hvknkkpqvlk<-* h+kn++pq+l+ ef01296 787 HTKNWRPQLLV 797 PF00324.11.fs: domain 1 of 3, from 226 to 393: score 68.0, E = 5.6e-18 *->HvqmialGgviGtGLfvgsgvvlaqaGpaglpllgyliagvviflvm +v + +l +++G+ Lf+++ +v+++aG++++ + ++li++ ++ l++ ef01296 226 GVYLPCLQNIFGVILFLRLTWVVGTAGVLQA-FAIVLICCCCTMLTA 271 lslgEmstngpvvsGsfytyasrflgpslGfatGwnyll.tvYwfswvfv +s+++++tng v +G+ y+++sr lgp++G+a+G+ + l+t++ ++ ef01296 272 ISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLgTTFAAAMYIL 321 ialeltaasiliqfwes.fpdipylwvwgsivdSgpndiRvIgavfivvl a e++ + i+ + ++ +d +++ + +n Rv g+ f+v++ ef01296 322 GAIEIFLVYIVPRAAIFhSDDALKESAA------MLNNMRVYGTAFLVLM 365 liinlvgvKgygeaEfwfalikviaiig<-* +++ ++gv++ ++ f+ + +++i++ ef01296 366 VLVVFIGVRYVNKFASLFLACVIVSILA 393 PF00324.11.fs: domain 2 of 3, from 527 to 578: score 26.8, E = 5.3e-07 *->iaaFaFtGielvgiaAgEsknPrKaiPkAilqvvwritifYilslla i++++ tGi+++ + +g++k+ +K+iP +++++++ + ++Y+ +++ ef01296 527 IFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVL 573 igllv<-* g+++ ef01296 574 FGACI 578 PF00324.11.fs: domain 3 of 3, from 607 to 797: score 66.2, E = 1.7e-17 *->linaviLtaaLSaansslysgsRmlyaLArdglaPikkflkkvdksg +i+++ + ++ +a++ sl++++R l+a A+d+++P+ ++++ ++ +g ef01296 607 VIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANG 653 vPlraillstaisllavavlwliillaslnpaapivfnfllaisgligli +P a+ll++ai+ l++ l+asl + api + f+l + + +l+ ef01296 654 EPTWALLLTAAIAELGI-------LIASLDLVAPILSMFFLMCYLFVNLA 696 vwllislshlrfRkafkyqgrsidelpfkaplgpfgvilalaaliiilli + l +l +++R+ f+y+ + ++ + ++l+ ++ + a+++++++ ef01296 697 CALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIA 746 qayyaflpvpkgpktwgaadfaalyltvllfiilligyklhvknkkpqvl +y + + +++k wg++ + ++ + + +++l + h+kn++pq+l ef01296 747 GMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLL 796 k<-* + ef01296 797 V 797 PF03522.6.ls: domain 1 of 1, from 1054 to 1083: score 77.4, E = 4.2e-20 *->VKDRnSiLRLtSlgSDedeeteagtekvhM<-* VKDRnS+LRLtS+gSDedeete+++ekvhM ef01296 1054 VKDRNSMLRLTSIGSDEDEETETYQEKVHM 1083 PF03522.6.fs: domain 1 of 1, from 1054 to 1083: score 75.4, E = 2.8e-20 *->VKDRnSiLRLtSlgSDedeeteagtekvhM<-* VKDRnS+LRLtS+gSDedeete+++ekvhM ef01296 1054 VKDRNSMLRLTSIGSDEDEETETYQEKVHM 1083 //