hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-05381794/chunk_1/iprscan-20080808-05381794.nocrc
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Query sequence: ef01296
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00930 2a30: K-Cl cotransporter                      2299.2          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00930   1/1     145  1186 .]     1  1171 []  2299.2        0

Alignments of top-scoring domains:
TIGR00930: domain 1 of 1, from 145 to 1186: score 2299.2, E = 0
                   *->ntvdavPriehyrntegqeerklnrpsleelhdllGFdkvvsllgpl
                      +++++++++++++++eg+e+ ++n++++ee++d++  +kv+sll+++
     ef01296   145    HKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTR--PKVSSLLNRM 189  

                   adytnngqeskeheeaEeaeetkekppaeavkfGwvkGVlvpCLlNIwGV
                   a+ytn++q++keheeaE+++e+k+kp ++++++G+++GV++pCL+NI+GV
     ef01296   190 ANYTNLTQGAKEHEEAENITEGKKKP-TKTPQMGTFMGVYLPCLQNIFGV 238  

                   iLFLRLsWIVGqAGIglslviillstvvTtiTglSmSAIATNGvVkGGGa
                   iLFLRL+W+VG+AG+++++ i+l+++++T++T++SmSAIATNGvV++GG+
     ef01296   239 ILFLRLTWVVGTAGVLQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGS 288  

                   YYLISRSLGPEfGgSIGLiFafANAVAvAMYvvGfaEtvldYivPaaaLl
                   Y++ISR+LGPEfGg++GL+F++++++A+AMY++G++E++l YivP+aa++
     ef01296   289 YFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIF 338  

                   revnGtdnglkimvdpiNDiRIiGtvtvvvLlgIsfaGmewenKaqvlfL
                   ++    d++lk++++++N++R++Gt ++v++++++f+G++++nK+++lfL
     ef01296   339 HS----DDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFL 384  

                   vivllSilnivvGtiipasdekpakGffglkaeiFsenqfDvCaKt.evd
                   ++v++Sil+i++G+i+++++ +p++++++l+++++s++++DvC+Kt+e++
     ef01296   385 ACVIVSILAIYAGAIKSSFA-PPHFPVCMLGNRTLSSRHIDVCSKTkEIN 433  

                   NeTVttrLWglFCsS.rllnatCDeyfsannvTfvpgirgaeggvikENL
                   N+TV+++LWg+FC+S++++natCDeyf++nnvT+++gi+g ++g+i+ENL
     ef01296   434 NMTVPSKLWGFFCNSsQFFNATCDEYFVHNNVTSIQGIPGLASGIITENL 483  

                   WSaYLeKGeivEkrglpStdvlgdlve.lYvvaDintsFFslfgIFFPsv
                   WS+YL+KGei+Ek++++S+dvlg +++++Yv++Di+tsF++l+gIFFPsv
     ef01296   484 WSNYLPKGEIIEKPSAKSSDVLG-SLNhEYVLVDITTSFTLLVGIFFPSV 532  

                   TGIlAGANiSGDLkDpqkAIPkGTLLAIltTtvvYlssvvlfGACvvRdA
                   TGI+AG+N+SGDLkD+qk+IP+GT+LAIltT++vYls+vvlfGAC+++++
     ef01296   533 TGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVV 582  

                   sGdlnDtlvtggltnctslACklgfdfseCakntCeYGLmnnlqvmslvs
                   ++d+++++v+                              +nl+v++l +
     ef01296   583 LRDKFGDAVK------------------------------GNLVVGTLSW 602  

                   pfpplIvaGiFsATLssALaSLvsAPrllQALckDnIyPlLqfFgkGyGk
                   p+p++Iv+G+F++T++++L+SL++APrllQA++kDnI+P+L++Fg+++++
     ef01296   603 PSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKAN 652  

                   ngEPlrayLLTffIallfiLIAeLntIAPIiSnFFLasYaliNfScFhas
                    gEP++a+LLT++Ia+l+iLIA+L+++API+S+FFL++Y+++N++c++++
     ef01296   653 -GEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQT 701  

                   LlrsPgWRPrFrYYnwwlSLlGaiLCvaiMFlisWwaALvaivIallLYk
                   Llr+P+WRPrFrYY+w+lS++G+++C+a+MF++sW++A+va+vIa+++Yk
     ef01296   702 LLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYK 751  

                   YVeYKkpdvnWGsstqalsyslALssllrLeevedHvKNwRPQcLVLtgp
                   Y+eY++++++WG+++++ls+s+A+ +llrLee+++H+KNwRPQ+LVL+++
     ef01296   752 YIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKL 801  

                   pGkLednvvcrPaLldlasqlkkkgkGLmIvGsVlqGprkervkEasaae
                   +   ed++v++P+Ll++asqlk +gkGL+IvGsV++G+++e+++Ea aae
     ef01296   802 D---EDLHVKHPRLLTFASQLK-AGKGLTIVGSVIVGNFLENYGEALAAE 847  

                   ekiqtwLekrKvkaFyavVvAedlreGvrhLiQasGLGrmkPNtlVmGyk
                   ++i++++e++Kvk+F++ VvA++lreG++hLiQ++GLG+mk+Nt+VmG++
     ef01296   848 QTIKHLMEAEKVKGFCQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWP 897  

                   kdWrqaedpraletYigilhdafdahlaVvvvrvsegldisavlqaqeel
                   ++Wrq+ed+ra++t+ig+++ +++ahla++v++++++++++         
     ef01296   898 NGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSN--------- 938  

                   sssqekrvrlkdvivdadssedsiqpkfkksseltitkkekekdkkeskq
                                                                     
     ef01296     - -------------------------------------------------- -    

                   ldmhkeikyptaslneldqkllqassqfqkkQgkGtIDVWWLvdDGGLtL
                                              + +++++G+IDVWW+v+DGG+++
     ef01296   939 ---------------------------V-EQFSEGNIDVWWIVHDGGMLM 960  

                   LLPYLLttkkkWkkCKiRiFvgaqkddrseqekkdlatLLykfRidfevi
                   LLP+LL+++k+W+kC iRiF++aq +d+s+q+kkdlat+Ly++Ri++ev+
     ef01296   961 LLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVE 1010 

                   vVlmkssDInaktypqkesveaFeemierfrleknekdreaqlvsdpnsa
                   vV+m++sDI+a+ty++++++e++++m++++rl+k+e+dreaqlv+d+ns+
     ef01296  1011 VVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSM 1060 

                   LRLeSlgsdeedEsetd.eKvklkrekPwkitdeekgd.skssegfkdll
                   LRL+S+gsde++E+et++eKv+++++k+++++  ++g+++ks+egf+dll
     ef01296  1061 LRLTSIGSDEDEETETYqEKVHMTWTKDKYMA--SRGQkAKSMEGFQDLL 1108 

                   smkPdlqsnrrksyrqvRLNEvlleySrdAaLvvlsLPvprkgsipdelY
                   +m+Pd qsn+r+++++v+LNEv++++S++A+Lv+l++P+p++++++de+Y
     ef01296  1109 NMRPD-QSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENY 1157 

                   MawLEvLsedLPpvLLVRGnhrnVlTfYS<-*
                   M++LEvL+e+L++vLLVRG++++V+T+YS   
     ef01296  1158 MEFLEVLTEGLERVLLVRGGGSEVITIYS    1186 

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