hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-05593316/chunk_1/iprscan-20080808-05593316.nocrc
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Query sequence: ef01465
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                   92.0    5.5e-27   1
PF00621.11.ls RhoGEF domain                                   93.8    4.9e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     207   384 ..     1   207 []    92.0  5.5e-27
PF00621.11.ls   1/1     207   384 ..     1   207 []    93.8  4.9e-25

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 207 to 384: score 92.0, E = 5.5e-27
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      +++E+   E   ++dL + ++ y  p+++ +     + + +++ +iF
     ef01465   207    AIYEMSRGEQDLIEDLKLARKAYHDPMLKLS-----IMSEEELTHIF 248  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +++ + + +h ++L  ++ ++                  + +G ++ +  
     ef01465   249 GDLDSYIPLHEDLLT-RIGEATKPD-----------GTVEQIGHILVSW- 285  

                   aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   ++ l+ Y+ Ycsn+ +A+ ll++   +++ p ++ fl+++  s+      
     ef01465   286 LPRLNAYRGYCSNQLAAKALLDQ---KKQDPRVQDFLQRCLESPFSR--- 329  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
                      kl+L s+L  P +R+ +YpLLLke+Lkhtp   ++++ ++L++a+ +
     ef01465   330 ---KLDLWSFLDIPRSRLVKYPLLLKEILKHTPK--EHPDVQLLEDAILI 374  

                   lqdlaksiNe<-*
                   +q++++ iN    
     ef01465   375 IQGVLSDINL    384  

PF00621.11.ls: domain 1 of 1, from 207 to 384: score 93.8, E = 4.9e-25
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      +++E+   E   ++dL + ++ y  p+++ +     + + +++ +iF
     ef01465   207    AIYEMSRGEQDLIEDLKLARKAYHDPMLKLS-----IMSEEELTHIF 248  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +++ + + +h ++L  ++ ++                  + +G ++ +  
     ef01465   249 GDLDSYIPLHEDLLT-RIGEATKPD-----------GTVEQIGHILVSW- 285  

                   aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   ++ l+ Y+ Ycsn+ +A+ ll++   +++ p ++ fl+++  s+      
     ef01465   286 LPRLNAYRGYCSNQLAAKALLDQ---KKQDPRVQDFLQRCLESPFSR--- 329  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
                      kl+L s+L  P +R+ +YpLLLke+Lkhtp   ++++ ++L++a+ +
     ef01465   330 ---KLDLWSFLDIPRSRLVKYPLLLKEILKHTPK--EHPDVQLLEDAILI 374  

                   lqdlaksiNe<-*
                   +q++++ iN    
     ef01465   375 IQGVLSDINL    384  

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