hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-06133021/chunk_1/iprscan-20080808-06133021.nocrc
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Query sequence: ef01508
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01853.9.ls MOZ/SAS family                                 482.8   3.8e-142   1
PF01853.9.fs MOZ/SAS family                                 480.9   1.4e-141   1
PF00628.19.fs PHD-finger                                      90.0    1.7e-28   3
PF00628.19.ls PHD-finger                                      88.7    1.7e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.ls   1/2     218   275 ..     1    51 []    41.8  2.1e-09
PF00628.19.fs   1/3     218   275 ..     1    51 []    39.8  2.2e-12
PF00628.19.ls   2/2     277   323 ..     1    51 []    46.8  6.6e-11
PF00628.19.fs   2/3     278   323 ..     5    51 .]    49.8  1.4e-15
PF01853.9.fs   1/1     572   759 ..     1   193 []   480.9 1.4e-141
PF01853.9.ls   1/1     572   759 ..     1   193 []   482.8 3.8e-142

Alignments of top-scoring domains:
PF00628.19.ls: domain 1 of 2, from 218 to 275: score 41.8, E = 2.1e-09
                   *->yCsvCgkey....sdaggdllqCDgCdrwfHlaClgpplepeeipe.
                      +Cs+C +++++++   +++l+ C +C+ + H++Cl++++e +   + 
     ef01508   218    ICSFCLGTKeqnrEKKPEELISCADCGNSGHPSCLKFSPELTVRVKa 264  

                   ..WyCpeCkpk<-*
                    +W+C eCk +   
     ef01508   265 lrWQCIECKTC    275  

PF00628.19.fs: domain 1 of 3, from 218 to 275: score 39.8, E = 2.2e-12
                   *->yCsvCgkey....sdaggdllqCDgCdrwfHlaClgpplepeeipe.
                      +Cs+C +++++++   +++l+ C +C+ + H++Cl++++e +   + 
     ef01508   218    ICSFCLGTKeqnrEKKPEELISCADCGNSGHPSCLKFSPELTVRVKa 264  

                   ..WyCpeCkpk<-*
                    +W+C eCk +   
     ef01508   265 lrWQCIECKTC    275  

PF00628.19.ls: domain 2 of 2, from 277 to 323: score 46.8, E = 6.6e-11
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                       C   ++    + +++l+CD+Cdr fH++C++ppl+  ++p++ W+C
     ef01508   277    SC---RDQ-GKNADNMLFCDSCDRGFHMECCDPPLT--RMPKgmWIC 317  

                   peCkpk<-*
                     C+p+   
     ef01508   318 QICRPR    323  

PF00628.19.fs: domain 2 of 3, from 278 to 323: score 49.8, E = 1.4e-15
                   *->CgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyCpeCk
                      C++    + +++l+CD+Cdr fH++C++ppl+  ++p++ W+C  C+
     ef01508   278    CRDQ-GKNADNMLFCDSCDRGFHMECCDPPLT--RMPKgmWICQICR 321  

                   pk<-*
                   p+   
     ef01508   322 PR    323  

PF01853.9.fs: domain 1 of 1, from 572 to 759: score 480.9, E = 1.4e-141
                   *->lrhPPGnEIYRkgniSvFEVDGrkqklYCQnLCLLAKLFLDhKtLYY
                      ++hPP+nEIYRk+niSvFEVDG++ ++YCQnLCLLAKLFLDhKtLYY
     ef01508   572    WFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYY 618  

                   DVdpFLFYiLtetDekGcHiVGYFSKEKessenYNlACILtLPpYQRkGY
                   DV+pFLFY+Lt++D kGcH+VGYFSKEK+++++YN++CI++LP+YQRkGY
     ef01508   619 DVEPFLFYVLTQNDVKGCHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGY 668  

                   GklLIdFSYeLSrkEgkiGsPEKPLSDLGlLSYrsYWsqtllelLlehkg
                   G++LIdFSY+LS++Eg+ GsPEKPLSDLG+LSY++YW++++le+L+ h++
     ef01508   669 GRFLIDFSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVILECLY-HQN 717  

                   ehgeydkitikelSkmTgitveDIisTLqsLnmikyykgqhiiclq<-*
                   ++    +i+ik+lSk Tgi+ +DI+sTL++L+m++++ +q++i+ +   
     ef01508   718 DK----QISIKKLSKLTGICPQDITSTLHHLRMLDFRSDQFVIIRR    759  

PF01853.9.ls: domain 1 of 1, from 572 to 759: score 482.8, E = 3.8e-142
                   *->lrhPPGnEIYRkgniSvFEVDGrkqklYCQnLCLLAKLFLDhKtLYY
                      ++hPP+nEIYRk+niSvFEVDG++ ++YCQnLCLLAKLFLDhKtLYY
     ef01508   572    WFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYY 618  

                   DVdpFLFYiLtetDekGcHiVGYFSKEKessenYNlACILtLPpYQRkGY
                   DV+pFLFY+Lt++D kGcH+VGYFSKEK+++++YN++CI++LP+YQRkGY
     ef01508   619 DVEPFLFYVLTQNDVKGCHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGY 668  

                   GklLIdFSYeLSrkEgkiGsPEKPLSDLGlLSYrsYWsqtllelLlehkg
                   G++LIdFSY+LS++Eg+ GsPEKPLSDLG+LSY++YW++++le+L+ h++
     ef01508   669 GRFLIDFSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVILECLY-HQN 717  

                   ehgeydkitikelSkmTgitveDIisTLqsLnmikyykgqhiiclq<-*
                   ++    +i+ik+lSk Tgi+ +DI+sTL++L+m++++ +q++i+ +   
     ef01508   718 DK----QISIKKLSKLTGICPQDITSTLHHLRMLDFRSDQFVIIRR    759  

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