hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-06133021/chunk_1/iprscan-20080808-06133021.nocrc
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Query sequence: ef01508
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  98.1    1.1e-24   2
SM00526                                                  39.6    4.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00526    1/1      95   175 ..     1    70 []    39.6  4.1e-07
SM00249    1/2     218   273 ..     1    39 []    40.6  2.2e-07
SM00249    2/2     274   321 ..     1    39 []    57.5  1.7e-12

Alignments of top-scoring domains:
SM00526: domain 1 of 1, from 95 to 175: score 39.6, E = 4.1e-07
                   *->pasHPpyse........MIteAItaLKERkGSSlqAIkKYIeanhyk
                      p++H + +++++ + +++I++A+++L E +GS l++I  +++ + ++
     ef01508    95    PRNHGKLDNkqnvdwnkLIKRAVEGLAESGGSTLKSIERFLKGQ-KD 140  

                   vlpnnnk.....frklLklaLkklVasGkLvqvKGs<-*
                   v      +  ++f ++L+la+k++   G+L++  G+   
     ef01508   141 VSALFGGsaasgFHQQLRLAIKRAIGHGRLLK-DGP    175  

SM00249: domain 1 of 2, from 218 to 273: score 40.6, E = 2.2e-07
                   *->yC.vCgk..........g.llqCdkgCdrwyHv.Clgpple....ep
                      +C++C ++++ ++++++++l++C   C+ + H++Cl++++e + +++
     ef01508   218    ICsFCLGtkeqnrekkpEeLISCA-DCGNSGHPsCLKFSPEltvrVK 263  

                   dg.wyCprCk<-*
                     +w+C +Ck   
     ef01508   264 ALrWQCIECK    273  

SM00249: domain 2 of 2, from 274 to 321: score 57.5, E = 1.7e-12
                   *->yC.vCgk.....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCpr
                      +C+ C++ +++ +++l+Cd +Cdr +H++C++ppl+++p+g w+C  
     ef01508   274    TCsSCRDqgknaDnMLFCD-SCDRGFHMeCCDPPLTrMPKGmWICQI 319  

                   Ck<-*
                   C+   
     ef01508   320 CR    321  

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