hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-06213916/chunk_1/iprscan-20080808-06213916.nocrc
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Query sequence: ef01524
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09031.1.fs Set2-Rpb1 interacting                          264.8    2.3e-78   1
PF09031.1.ls Set2-Rpb1 interacting                          266.7    4.3e-77   1
PF00856.18.ls SET domain                                     170.6    3.7e-48   1
PF00856.18.fs SET domain                                     169.0    1.1e-47   1
PF00397.16.fs WW domain                                       50.9    2.8e-13   1
PF00397.16.ls WW domain                                       52.9    9.9e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00856.18.fs   1/1    1547  1754 ..     1   259 []   169.0  1.1e-47
PF00856.18.ls   1/1    1547  1754 ..     1   259 []   170.6  3.7e-48
PF00397.16.fs   1/1    2472  2501 ..     1    30 []    50.9  2.8e-13
PF00397.16.ls   1/1    2472  2501 ..     1    30 []    52.9  9.9e-13
PF09031.1.fs   1/1    2540  2636 ..     1   100 []   264.8  2.3e-78
PF09031.1.ls   1/1    2540  2636 ..     1   100 []   266.7  4.3e-77

Alignments of top-scoring domains:
PF00856.18.fs: domain 1 of 1, from 1547 to 1754: score 169.0, E = 1.1e-47
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+++++++e++ te+kGwGlra++d+p ++f++EY+Ge+++++e++
     ef01524  1547    FQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFK 1593 

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                    r +     ++  n++++    Y+f+ ++                     
     ef01524  1594 ARVK-----EYARNKNIH----YYFMALK--------------------- 1613 

                   sPlfWseeellLkGtqlle.tdk.le.leey.dllaeeievvlqhk.lFp
                                  + +++ ++ ++  ++++dl      ++++++++F 
     ef01524  1614 ---------------NDETeSRSiAQaGVQWqDLG-----SLQPLPpGFK 1643 

                   .dv..........................................e.eef
                   +    +  ++ + ++++++  +    ++++ +++ ++ +++++ ++  + 
     ef01524  1644 rFSclsflsswdyrrppprlanfcifsrdgvsprwpgwsrspdltKaLR- 1692 

                   sfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRFi
                                                       +iDAt kGN++RF+
     ef01524  1693 ----------------------------------LQIIDATQKGNCSRFM 1708 

                   NHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeELt
                   NHSCePNce+q+++v+              g  r+++f+++ +p G ELt
     ef01524  1709 NHSCEPNCETQKWTVN--------------GQLRVGFFTTKLVPSGSELT 1744 

                   ydYgydksnge<-*
                   +dY+ + + g+   
     ef01524  1745 FDYQ-FQRYGK    1754 

PF00856.18.ls: domain 1 of 1, from 1547 to 1754: score 170.6, E = 3.7e-48
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+++++++e++ te+kGwGlra++d+p ++f++EY+Ge+++++e++
     ef01524  1547    FQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFK 1593 

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                    r +     ++  n++++    Y+f+ ++                     
     ef01524  1594 ARVK-----EYARNKNIH----YYFMALK--------------------- 1613 

                   sPlfWseeellLkGtqlle.tdk.le.leey.dllaeeievvlqhk.lFp
                                  + +++ ++ ++  ++++dl      ++++++++F 
     ef01524  1614 ---------------NDETeSRSiAQaGVQWqDLG-----SLQPLPpGFK 1643 

                   .dv..........................................e.eef
                   +    +  ++ + ++++++  +    ++++ +++ ++ +++++ ++  + 
     ef01524  1644 rFSclsflsswdyrrppprlanfcifsrdgvsprwpgwsrspdltKaLR- 1692 

                   sfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRFi
                                                       +iDAt kGN++RF+
     ef01524  1693 ----------------------------------LQIIDATQKGNCSRFM 1708 

                   NHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeELt
                   NHSCePNce+q+++v+              g  r+++f+++ +p G ELt
     ef01524  1709 NHSCEPNCETQKWTVN--------------GQLRVGFFTTKLVPSGSELT 1744 

                   ydYgydksnge<-*
                   +dY+ + + g+   
     ef01524  1745 FDYQ-FQRYGK    1754 

PF00397.16.fs: domain 1 of 1, from 2472 to 2501: score 50.9, E = 2.8e-13
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lpp+W+ + dp+G++YYy+ +T++TqW++P   
     ef01524  2472    LPPNWKTARDPEGKIYYYHVITRQTQWDPP    2501 

PF00397.16.ls: domain 1 of 1, from 2472 to 2501: score 52.9, E = 9.9e-13
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lpp+W+ + dp+G++YYy+ +T++TqW++P   
     ef01524  2472    LPPNWKTARDPEGKIYYYHVITRQTQWDPP    2501 

PF09031.1.fs: domain 1 of 1, from 2540 to 2636: score 264.8, E = 2.3e-78
                   *->eadLsSelAkkakEkFRsyveiSgfIvqcLnPYRKpsCklGRITntE
                      ead+sSelAkk+kE+FR  +e+S+fIvqcLnPYRKp+Ck+GRIT+tE
     ef01524  2540    EADTSSELAKKSKEVFR--KEMSQFIVQCLNPYRKPDCKVGRITTTE 2584 

                   DFKhLarKLthgVmnKELKyCenpgedLectEsVkhKskefIkkYmrkhG
                   DFKhLarKLthgVmnKELKyC+np edLec+E+VkhK+ke+IkkYm+k+G
     ef01524  2585 DFKHLARKLTHGVMNKELKYCKNP-EDLECNENVKHKTKEYIKKYMQKFG 2633 

                   pVY<-*
                   +VY   
     ef01524  2634 AVY    2636 

PF09031.1.ls: domain 1 of 1, from 2540 to 2636: score 266.7, E = 4.3e-77
                   *->eadLsSelAkkakEkFRsyveiSgfIvqcLnPYRKpsCklGRITntE
                      ead+sSelAkk+kE+FR  +e+S+fIvqcLnPYRKp+Ck+GRIT+tE
     ef01524  2540    EADTSSELAKKSKEVFR--KEMSQFIVQCLNPYRKPDCKVGRITTTE 2584 

                   DFKhLarKLthgVmnKELKyCenpgedLectEsVkhKskefIkkYmrkhG
                   DFKhLarKLthgVmnKELKyC+np edLec+E+VkhK+ke+IkkYm+k+G
     ef01524  2585 DFKHLARKLTHGVMNKELKYCKNP-EDLECNENVKHKTKEYIKKYMQKFG 2633 

                   pVY<-*
                   +VY   
     ef01524  2634 AVY    2636 

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