hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-06213916/chunk_1/iprscan-20080808-06213916.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ef01524
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00317                                                 140.7    1.5e-37   1
SM00570                                                 115.3    7.1e-30   1
SM00456                                                  53.2    3.4e-11   1
SM00508                                                  34.2    1.8e-05   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00570      1/1    1497  1552 ..     1    62 []   115.3  7.1e-30
SM00317      1/1    1553  1754 ..     1   114 []   140.7  1.5e-37
SM00508      1/1    1755  1771 ..     1    17 []    34.2  1.8e-05
SM00456      1/1    2471  2503 ..     1    34 []    53.2  3.4e-11

Alignments of top-scoring domains:
SM00570: domain 1 of 1, from 1497 to 1552: score 115.3, E = 7.1e-30
                   *->ndimtCeCkplddDgelkGegaCgedsdClNRmmElliECsDpssCp
                      +++m+CeC+pl++D+ ++Ge+aCg  +dClNR+  l+iECs  s+Cp
     ef01524  1497    IKRMQCECTPLSKDERAQGEIACG--EDCLNRL--LMIECS--SRCP 1537 

                   cGsyCsNQrFQkrqy<-*
                   +G+yCsN+rFQ++q+   
     ef01524  1538 NGDYCSNRRFQRKQH    1552 

SM00317: domain 1 of 1, from 1553 to 1754: score 140.7, E = 1.5e-37
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      a++ev  +++kGwGlra++d+p ++f+ley+Ge++++++ + + ++ 
     ef01524  1553    ADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLdhkefkarvkey 1599 

                   ..................................................
                    ++++ +      +++++++++  + + + ++ ++ ++ +++ ++ +  +
     ef01524  1600 arnknihyyfmalkndetesrsiaqagvqwqdlgslqplppgfkrfscls 1649 

                   ......................................fylfd..ciDat
                     ++ + ++++++  +    ++++ +++ ++ +++++ + + + + iDat
     ef01524  1650 flsswdyrrppprlanfcifsrdgvsprwpgwsrspdlTKALRlqIIDAT 1699 

                   ranggkGniarfiNHSCePNcelifvevdgfdprgasdsadprivifAlr
                   +    kGn++rf+NHSCePNce++++ v+g            r+++f+++
     ef01524  1700 Q----KGNCSRFMNHSCEPNCETQKWTVNG----------QLRVGFFTTK 1735 

                   dIkpGEELtidYgddyege<-*
                    ++ G ELt+dY++ ++g+   
     ef01524  1736 LVPSGSELTFDYQFQRYGK    1754 

SM00508: domain 1 of 1, from 1755 to 1771: score 34.2, E = 1.8e-05
                   *->kkqpClCGaanCrGfLg<-*
                      ++q+C+CG+anCrG+Lg   
     ef01524  1755    EAQKCFCGSANCRGYLG    1771 

SM00456: domain 1 of 1, from 2471 to 2503: score 53.2, E = 3.4e-11
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                       lPp+W+ + dp+ G++YYy+++T++tqW++P++   
     ef01524  2471    VLPPNWKTARDPE-GKIYYYHVITRQTQWDPPTW    2503 

//