hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-06284380/chunk_1/iprscan-20080808-06284380.nocrc
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Query sequence: ef01529
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  74.0    1.9e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/3     500   537 ..     1    46 []    22.2    0.074
SM00320    2/3     543   584 ..     1    46 []    20.9     0.18
SM00320    3/3     589   628 ..     1    46 []    31.0  0.00017

Alignments of top-scoring domains:
SM00320: domain 1 of 3, from 500 to 537: score 22.2, E = 0.074
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                        +++ tl+ H     V++v++s         +++++g+ g++++Wd
     ef01529   500    HaRQINTLN-HGE--VVCAVTISNPT------RHVYTGGKGCVKVWD 537  

                   <-*
                      
     ef01529     -     -    

SM00320: domain 2 of 3, from 543 to 584: score 20.9, E = 0.18
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++++++ l+    ++  +++s++  pdg        l++g++ +t+ 
     ef01529   543    NkSPVSQLDclNRDN--YIRSCKLLPDG------CTLIVGGeASTLS 581  

                   lWd<-*
                   +Wd   
     ef01529   582 IWD    584  

SM00320: domain 3 of 3, from 589 to 628: score 31.0, E = 0.00017
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+      +++++a+spd+      ++ +s+++Dg+i +W
     ef01529   589    TpRIKAELTSSAP--ACYALAISPDS------KVCFSCCsDGNIAVW 627  

                   d<-*
                   d   
     ef01529   628 D    628  

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