hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-06540371/chunk_1/iprscan-20080808-06540371.nocrc
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Query sequence: ef01757
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     62.1    1.2e-16   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     64.0    4.6e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      31    97 ..     1    74 []    62.1  1.2e-16
PF00076.12.ls   1/1      31    97 ..     1    74 []    64.0  4.6e-16

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 31 to 97: score 62.1, E = 1.2e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V NL+  ++++dLkd+ ++ G+++ ++  +         k+ + +
     ef01757    31    LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKG-------RKNEGVI 70   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF +++d+++Al++l+G+e++gr++r    
     ef01757    71 EFVSYSDMKRALEKLDGTEVNGRKIRL    97   

PF00076.12.ls: domain 1 of 1, from 31 to 97: score 64.0, E = 4.6e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V NL+  ++++dLkd+ ++ G+++ ++  +         k+ + +
     ef01757    31    LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKG-------RKNEGVI 70   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF +++d+++Al++l+G+e++gr++r    
     ef01757    71 EFVSYSDMKRALEKLDGTEVNGRKIRL    97   

//