hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-07062719/chunk_1/iprscan-20080808-07062719.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef01953 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00856.18.ls SET domain 196.2 7.4e-56 1 PF00856.18.fs SET domain 194.7 2e-55 1 PF00855.8.fs PWWP domain 143.8 3.2e-42 2 PF00855.8.ls PWWP domain 147.5 3.2e-41 2 PF00628.19.fs PHD-finger 112.2 1.4e-35 4 PF00628.19.ls PHD-finger 117.0 4.9e-32 3 PF00505.9.fs HMG (high mobility group) box 24.1 4.6e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00855.8.fs 1/2 226 302 .. 1 86 [] 62.2 5.9e-18 PF00855.8.ls 1/2 226 302 .. 1 86 [] 64.1 4.3e-16 PF00505.9.fs 1/1 465 509 .. 6 50 .. 24.1 4.6e-06 PF00628.19.ls 1/3 676 720 .. 1 51 [] 47.1 5.4e-11 PF00628.19.fs 1/4 676 720 .. 1 51 [] 45.3 4e-14 PF00628.19.fs 3/4 840 882 .. 1 51 [] 55.9 1.6e-17 PF00628.19.ls 2/3 840 882 .. 1 51 [] 57.7 3.5e-14 PF00855.8.ls 2/2 884 958 .. 1 86 [] 83.5 6.2e-22 PF00855.8.fs 2/2 884 958 .. 1 86 [] 81.6 1e-23 PF00856.18.fs 1/1 1064 1193 .. 1 259 [] 194.7 2e-55 PF00856.18.ls 1/1 1064 1193 .. 1 259 [] 196.2 7.4e-56 PF00628.19.fs 4/4 1248 1295 .. 1 51 [] 10.3 0.0066 Alignments of top-scoring domains: PF00855.8.fs: domain 1 of 2, from 226 to 302: score 62.2, E = 5.9e-18 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr +++ GDLVw K++G+pwWP++v +++ + kLK + ef01953 226 KYNVGDLVWSKVSGYPWWPCMVSADPLL--HSYTKLKGQ--KKSARQ 268 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++VqFFgd + raw+ k+l++ e++++ ek + ef01953 269 YHVQFFGDAPERAWIFEKSLVAF-----EGEGQFEKLCQ 302 PF00855.8.ls: domain 1 of 2, from 226 to 302: score 64.1, E = 4.3e-16 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr +++ GDLVw K++G+pwWP++v +++ + kLK + ef01953 226 KYNVGDLVWSKVSGYPWWPCMVSADPLL--HSYTKLKGQ--KKSARQ 268 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++VqFFgd + raw+ k+l++ e++++ ek + ef01953 269 YHVQFFGDAPERAWIFEKSLVAF-----EGEGQFEKLCQ 302 PF00505.9.fs: domain 1 of 1, from 465 to 509: score 24.1, E = 4.6e-06 *->sAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeKapY<- s+F++f+q +R++++ae+P++s eI l W+ Lse+ +a+Y ef01953 465 SQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQRARY 509 * ef01953 - - PF00628.19.ls: domain 1 of 3, from 676 to 720: score 47.1, E = 5.4e-11 *->yCsvCgkeysdaggdllqCDg.CdrwfHlaClgpplepeeipeWyCp C+ C k +g ll+C+g+C+ +fHlaClg++ +pe+ ++C ef01953 676 VCQLCEK-----PGSLLLCEGpCCGAFHLACLGLSRRPEGR--FTCS 715 eCkpk<-* eC ++ ef01953 716 ECASG 720 PF00628.19.fs: domain 1 of 4, from 676 to 720: score 45.3, E = 4e-14 *->yCsvCgkeysdaggdllqCDg.CdrwfHlaClgpplepeeipeWyCp C+ C k +g ll+C+g+C+ +fHlaClg++ +pe+ ++C ef01953 676 VCQLCEK-----PGSLLLCEGpCCGAFHLACLGLSRRPEGR--FTCS 715 eCkpk<-* eC ++ ef01953 716 ECASG 720 PF00628.19.fs: domain 3 of 4, from 840 to 882: score 55.9, E = 1.6e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C vC+k gg ll+C++C+ +fH++Cl++ e+p+++W+C ef01953 840 WCFVCSK-----GGSLLCCESCPAAFHPDCLNI-----EMPDgsWFC 876 peCkpk<-* ++C+++ ef01953 877 NDCRAG 882 PF00628.19.ls: domain 2 of 3, from 840 to 882: score 57.7, E = 3.5e-14 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C vC+k gg ll+C++C+ +fH++Cl++ e+p+++W+C ef01953 840 WCFVCSK-----GGSLLCCESCPAAFHPDCLNI-----EMPDgsWFC 876 peCkpk<-* ++C+++ ef01953 877 NDCRAG 882 PF00855.8.ls: domain 2 of 2, from 884 to 958: score 83.5, E = 6.2e-22 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr ++++ D++w+K++ ++wWPA+v+++k +p ++ k + + ++ ef01953 884 KLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQK------MKHEIGE 924 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++V+FFg+ +y +w++++r++P+ +e+ ++++++ ef01953 925 FPVFFFGSKDY-YWTHQARVFPY----MEGDRGSRYQGV 958 PF00855.8.fs: domain 2 of 2, from 884 to 958: score 81.6, E = 1e-23 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr ++++ D++w+K++ ++wWPA+v+++k +p ++ k + + ++ ef01953 884 KLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQK------MKHEIGE 924 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++V+FFg+ +y +w++++r++P+ +e+ ++++++ ef01953 925 FPVFFFGSKDY-YWTHQARVFPY----MEGDRGSRYQGV 958 PF00856.18.fs: domain 1 of 1, from 1064 to 1193: score 194.7, E = 2e-55 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k++++ +++kt++kGwGl+a++dI+kGef+ EY+Geli+ ee+ ef01953 1064 FTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECM 1110 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy r k + + ++++ Y++ +d+ ef01953 1111 ARI------KHAHENDITHF--YMLTIDK--------------------- 1131 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee ef01953 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDA+ kGN++RF ef01953 1132 -----------------------------------DRIIDAGPKGNYSRF 1146 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL +NHSC+PNce+ +++v+ gd r++lfA +dIpaG+EL ef01953 1147 MNHSCQPNCETLKWTVN--------------GDTRVGLFAVCDIPAGTEL 1182 tydYgydksnge<-* t++Y+ ++ g+ ef01953 1183 TFNYN-LDCLGN 1193 PF00856.18.ls: domain 1 of 1, from 1064 to 1193: score 196.2, E = 7.4e-56 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k++++ +++kt++kGwGl+a++dI+kGef+ EY+Geli+ ee+ ef01953 1064 FTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECM 1110 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy r k + + ++++ Y++ +d+ ef01953 1111 ARI------KHAHENDITHF--YMLTIDK--------------------- 1131 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee ef01953 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDA+ kGN++RF ef01953 1132 -----------------------------------DRIIDAGPKGNYSRF 1146 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL +NHSC+PNce+ +++v+ gd r++lfA +dIpaG+EL ef01953 1147 MNHSCQPNCETLKWTVN--------------GDTRVGLFAVCDIPAGTEL 1182 tydYgydksnge<-* t++Y+ ++ g+ ef01953 1183 TFNYN-LDCLGN 1193 PF00628.19.fs: domain 4 of 4, from 1248 to 1295: score 10.3, E = 0.0066 *->yCsvCgkeysdaggdllqCD.g.CdrwfHlaClgpplepeeipeWyC C Cg+ gg l++CD++ C +++Hl+Clg+ +p ++ W C ef01953 1248 ECFRCGD-----GGQLVLCDrKfCTKAYHLSCLGLGKRPFGK--WEC 1287 p..eCkpk<-* p ++C+ + ef01953 1288 PwhHCDVC 1295 //