hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-07062719/chunk_1/iprscan-20080808-07062719.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef01953 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00317 158.6 6.2e-43 1 SM00293 157.0 1.9e-42 2 SM00249 155.5 5.4e-42 4 SM00570 104.2 1.5e-26 1 SM00398 54.1 1.9e-11 1 SM00508 28.3 0.001 1 SM00184 28.0 0.0013 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00293 1/2 227 292 .. 1 84 [] 64.4 1.4e-14 SM00398 1/1 459 529 .. 1 71 [] 54.1 1.9e-11 SM00249 1/4 676 718 .. 1 39 [] 37.3 2e-06 SM00184 1/2 677 717 .. 1 23 [] 3.0 9.2 SM00249 2/4 723 770 .. 1 39 [] 23.6 0.027 SM00184 2/2 724 769 .. 1 23 [] 25.0 0.01 SM00249 3/4 840 880 .. 1 39 [] 51.3 1.3e-10 SM00293 2/2 885 947 .. 1 84 [] 92.6 4.6e-23 SM00570 1/1 1018 1069 .. 1 62 [] 104.2 1.5e-26 SM00317 1/1 1070 1193 .. 1 114 [] 158.6 6.2e-43 SM00508 1/1 1194 1210 .. 1 17 [] 28.3 0.001 SM00249 4/4 1248 1291 .. 1 39 [] 43.2 3.5e-08 Alignments of top-scoring domains: SM00293: domain 1 of 2, from 227 to 292: score 64.4, E = 1.4e-14 *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk ++ GDlVw K++G+PwWP++v +++ s ef01953 227 YNVGDLVWSKVSGYPWWPCMVSADPLLHSYTK--------------- 258 leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-* ++ +k+ + +y+V+FFgd + raw+ ++l+ + ef01953 259 ---LKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFE 292 SM00398: domain 1 of 1, from 459 to 529: score 54.1, E = 1.9e-11 *->kpKrPmsafmlFsqenRakikkenPdlknaeisKklgerWkeLseee ++ + s+f++F+q +R+++++e+Pd++ ei +l +W +Lse++ ef01953 459 RKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQ 505 KapYeekAekdkeryekempeykk<-* +a+Y k++ + +e +++ + ef01953 506 RARYNTKFALVAPVQAEEDSGNVN 529 SM00249: domain 1 of 4, from 676 to 718: score 37.3, E = 2e-06 *->yC.vCgk.g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-* +C++C k+g+ll+C++ C+ ++H+ Clg++ + p+g++ C++C ef01953 676 VCqLCEKpGsLLLCEGPCCGAFHLaCLGLSRR-PEGrFTCSECA 718 SM00184: domain 1 of 2, from 677 to 717: score 3.0, E = 9.2 *->CpICle.....pvvlpCgH.FCr.Ci...........CPlC<-* C +C +++ ++ pC F+ C++ +++++++ +C C ef01953 677 CQLCEKpgsllLCEGPCCGaFHLaCLglsrrpegrftCSEC 717 SM00249: domain 2 of 4, from 723 to 770: score 23.6, E = 0.027 *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..epdg.wyCprC C vC++++ + C ++C++ yH C++ +++ ++ +++Cp + ef01953 723 SCfVCKEskTdVKRCVvTQCGKFYHEaCVKKYPLtvFESRgFRCPLH 769 k<-* + ef01953 770 S 770 SM00184: domain 2 of 2, from 724 to 769: score 25.0, E = 0.01 *->CpICle.......pvvlpCgH.FCr.Ci..............CPlC< C +C+e++++ +++vv+ Cg +++ C+++ + + ++++ +CPl ef01953 724 CFVCKEsktdvkrCVVTQCGKfYHEaCVkkypltvfesrgfrCPLH 769 -* ef01953 - - SM00249: domain 3 of 4, from 840 to 880: score 51.3, E = 1.3e-10 *->yC.vCgk.g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-* +C vC k+g+ll+C+ +C+ ++H++Cl+++++ dg+w+C+ C+ ef01953 840 WCfVCSKgGsLLCCE-SCPAAFHPdCLNIEMP--DGsWFCNDCR 880 SM00293: domain 2 of 2, from 885 to 947: score 92.6, E = 4.6e-23 *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk +++ D++w+K + ++wWPA+v++pk +p ni ef01953 885 LHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQ--------------- 916 leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-* k+k+ ++++pV+FFg+kd+ +w++++++fP++ ef01953 917 -----KMKHEIGEFPVFFFGSKDY-YWTHQARVFPYM 947 SM00570: domain 1 of 1, from 1018 to 1069: score 104.2, E = 1.5e-26 *->ndimtCeCkplddDgelkGegaCgedsdClNRmmElliECsDpssCp +i++C+Ckp+d e++Cg+ds+ClNRm l++EC+ p++Cp ef01953 1018 SEIPKCNCKPTD-------ENPCGFDSECLNRM--LMFECH-PQVCP 1054 cGsyCsNQrFQkrqy<-* +G++C+NQ+F+krqy ef01953 1055 AGEFCQNQCFTKRQY 1069 SM00317: domain 1 of 1, from 1070 to 1193: score 158.6, E = 6.2e-43 *->aklevfkskgkGwGlratedIpkGefIleyvGeii............ + ++ k++gkGwGl+a++dI+kGef+ eyvGe+i++++ + ++ ef01953 1070 PETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIdeeecmarikha 1116 .......fylfd.....ciDatranggkGniarfiNHSCePNcelifvev ++++ ++fy+ ++++ iDa kGn++rf+NHSC+PNce+ ++ v ef01953 1117 hendithFYMLTidkdrIIDAGP----KGNYSRFMNHSCQPNCETLKWTV 1162 dgfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-* +g d+r+++fA dI++G+ELt++Y+ d+ g+ ef01953 1163 NG----------DTRVGLFAVCDIPAGTELTFNYNLDCLGN 1193 SM00508: domain 1 of 1, from 1194 to 1210: score 28.3, E = 0.001 *->kkqpClCGaanCrGfLg<-* +k C+CGa+nC+GfLg ef01953 1194 EKTVCRCGASNCSGFLG 1210 SM00249: domain 4 of 4, from 1248 to 1291: score 43.2, E = 3.5e-08 *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgppleepdg.wyCprCk<- C Cg++g+l++Cd+k C ++yH++Clg+ ++ p g+w Cp++ ef01953 1248 ECfRCGDgGqLVLCDrKFCTKAYHLsCLGLGKR-PFGkWECPWHH 1291 * ef01953 - - //