hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-07135983/chunk_1/iprscan-20080808-07135983.nocrc
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Query sequence: ef02128
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01285.9.fs TEA/ATTS domain family                         643.1   2.1e-190   1
PF01285.9.ls TEA/ATTS domain family                         509.1   4.5e-150   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01285.9.ls   1/1       1   363 [.     1   513 []   509.1 4.5e-150
PF01285.9.fs   1/1      55   363 ..   165   513 .]   643.1 2.1e-190

Alignments of top-scoring domains:
PF01285.9.ls: domain 1 of 1, from 1 to 363: score 509.1, E = 4.5e-150
                   *->vPsfeLvnatlkaewtaskspsakatktDkqrgeestggSeagdkpg
                                    w ++++      +      +      +a +++ 
     ef02128     1    -------------VWFSLLAV----LFI--HACLLFLAYFVALYFSP 28   

                   dsgekSekteslsarPrrDlskDAEgVWSpdiEqaFQEALaiyPPcGRRK
                    +          +        + A+                       + 
     ef02128    29 CA----------R--------GCAC----------------------VTC 38   

                   IIlSdeGKmYGRNELIA.rYIKlrTGKtRTRKQVSSHIQVLarrkkGlrd
                                 L+A rY                   VL         
     ef02128    39 --------------LVAmRY-------------------VLSWCV----- 50   

                   iqaKlKeqsdrstaqtqpvdqvskdkafqlmasmsSaqlvSaeslllkLs
                        K             dq++kdka+q+ma+msSaq+vSa+++++kL+
     ef02128    51 -TVTFK-------------DQTAKDKALQHMAAMSSAQIVSATAIHNKLG 86   

                   ppGsldlpsavtfspvslfwdgieetiqplssqddvkpftqpdyivqats
                   +pG +  p++ tf+ +++fw+g+++t+qp+ssqd vkpf+q++y++q+++
     ef02128    87 LPG-I--PRP-TFPGAPGFWPGMIQTGQPGSSQD-VKPFVQQAYPIQPAV 131  

                   salslpgfeptppLPpPapslsnWqksfPhLirnlastndPLnlrllefs
                   +a ++pgfep++   +Paps+++Wq+      r++++t+    lrl+efs
     ef02128   132 TA-PIPGFEPAS---APAPSVPAWQG------RSIGTTK----LRLVEFS 167  

                   aflelqrdfesydkhLfVhieqdianPseqsdPtlesvdirqiydkFpEK
                   afle+qrd++sy+khLfVhi++  an+s+ sdP+lesvdirqiydkFpEK
     ef02128   168 AFLEQQRDPDSYNKHLFVHIGH--ANHSY-SDPLLESVDIRQIYDKFPEK 214  

                   kggLkelyekgpkPhttkvnafFlvkfWAdlntkqetqdepeasStGfyg
                   kggLkel+ kgp+      nafFlvkfWAdln++  +qd+++a    fyg
     ef02128   215 KGGLKELFGKGPQ------NAFFLVKFWADLNCN--IQDDAGA----FYG 252  

                   vsSqYeSrEnvvltcstkvcsfgkqvvekveneyprsengrrkrmaiyvy
                   v+SqYeS+En+++tcstkvcsfgkqvvekve+ey+r+engr      +vy
     ef02128   253 VTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGR------FVY 296  

                   rinrspmceYminfihkLkqlperymmNSVLENFTILQvvtnrdtqelll
                   rinrspmceYminfihkLk+lpe+ymmNSVLENFTIL+vvtnrdtqe+ll
     ef02128   297 RINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLL 346  

                   ciayvFevSnqehgaqh<-*
                   c+a+vFevSn+ehgaqh   
     ef02128   347 CMACVFEVSNSEHGAQH    363  

PF01285.9.fs: domain 1 of 1, from 55 to 363: score 643.1, E = 2.1e-190
                   *->vdqvskdkafqlmasmsSaqlvSaeslllkLsppGsldlpsavtfsp
                      +dq++kdka+q+ma+msSaq+vSa+++++kL++pG +  p++ tf+ 
     ef02128    55    KDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPG-I--PRP-TFPG 97   

                   vslfwdgieetiqplssqddvkpftqpdyivqatssalslpgfeptppLP
                   +++fw+g+++t+qp+ssqd vkpf+q++y++q++++a ++pgfep++   
     ef02128    98 APGFWPGMIQTGQPGSSQD-VKPFVQQAYPIQPAVTA-PIPGFEPAS--- 142  

                   pPapslsnWqksfPhLirnlastndPLnlrllefsaflelqrdfesydkh
                   +Paps+++Wq+      r++++t+    lrl+efsafle+qrd++sy+kh
     ef02128   143 APAPSVPAWQG------RSIGTTK----LRLVEFSAFLEQQRDPDSYNKH 182  

                   LfVhieqdianPseqsdPtlesvdirqiydkFpEKkggLkelyekgpkPh
                   LfVhi++  an+s+ sdP+lesvdirqiydkFpEKkggLkel+ kgp+  
     ef02128   183 LFVHIGH--ANHSY-SDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQ-- 227  

                   ttkvnafFlvkfWAdlntkqetqdepeasStGfygvsSqYeSrEnvvltc
                       nafFlvkfWAdln++  +qd+++a    fygv+SqYeS+En+++tc
     ef02128   228 ----NAFFLVKFWADLNCN--IQDDAGA----FYGVTSQYESSENMTVTC 267  

                   stkvcsfgkqvvekveneyprsengrrkrmaiyvyrinrspmceYminfi
                   stkvcsfgkqvvekve+ey+r+engr      +vyrinrspmceYminfi
     ef02128   268 STKVCSFGKQVVEKVETEYARFENGR------FVYRINRSPMCEYMINFI 311  

                   hkLkqlperymmNSVLENFTILQvvtnrdtqelllciayvFevSnqehga
                   hkLk+lpe+ymmNSVLENFTIL+vvtnrdtqe+llc+a+vFevSn+ehga
     ef02128   312 HKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGA 361  

                   qh<-*
                   qh   
     ef02128   362 QH    363  

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