hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-07211251/chunk_1/iprscan-20080808-07211251.nocrc
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Query sequence: ef02131
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00226.21.fs DnaJ domain                                    139.1    9.9e-41   1
PF00226.21.ls DnaJ domain                                    141.0    3.1e-39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00226.21.fs   1/1       4    67 ..     1    76 []   139.1  9.9e-41
PF00226.21.ls   1/1       4    67 ..     1    76 []   141.0  3.1e-39

Alignments of top-scoring domains:
PF00226.21.fs: domain 1 of 1, from 4 to 67: score 139.1, E = 9.9e-41
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                      dyYe+LGv r As e+IKKAYRkLAlk+HPDKNp+++          
     ef02131     4    DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENK---------- 40   

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                     eeAe+kFk+++eAYevLSD +kR iYD   
     ef02131    41 --EEAERKFKQVAEAYEVLSDAKKRDIYD    67   

PF00226.21.ls: domain 1 of 1, from 4 to 67: score 141.0, E = 3.1e-39
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                      dyYe+LGv r As e+IKKAYRkLAlk+HPDKNp+++          
     ef02131     4    DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENK---------- 40   

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                     eeAe+kFk+++eAYevLSD +kR iYD   
     ef02131    41 --EEAERKFKQVAEAYEVLSDAKKRDIYD    67   

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