# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oef02191.fasta.nr -Q ef02191.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ef02191, 520 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6809319 sequences Expectation_n fit: rho(ln(x))= 6.4827+/-0.000209; mu= 6.1676+/- 0.012 mean_var=157.9787+/-29.884, 0's: 37 Z-trim: 83 B-trim: 0 in 0/66 Lambda= 0.102041 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|46397744|sp|P35269.2|T2FA_HUMAN General transcr ( 517) 3385 510.3 4.4e-142 gi|30585087|gb|AAP36816.1| Homo sapiens general tr ( 518) 3385 510.3 4.4e-142 gi|35871|emb|CAA45404.1| RAP74 [Homo sapiens] ( 517) 3384 510.2 4.9e-142 gi|48145713|emb|CAG33079.1| GTF2F1 [Homo sapiens] ( 517) 3381 509.7 6.6e-142 gi|35869|emb|CAA45408.1| RNA polymerase II associa ( 517) 3381 509.7 6.6e-142 gi|119589505|gb|EAW69099.1| general transcription ( 519) 3371 508.3 1.8e-141 gi|114674895|ref|XP_512314.2| PREDICTED: general t ( 517) 3368 507.8 2.5e-141 gi|109123096|ref|XP_001087325.1| PREDICTED: genera ( 517) 3350 505.2 1.6e-140 gi|75057902|sp|Q5EA53.1|T2FA_BOVIN General transcr ( 517) 3224 486.6 6e-135 gi|149716716|ref|XP_001495635.1| PREDICTED: simila ( 517) 3182 480.4 4.4e-133 gi|73987252|ref|XP_533935.2| PREDICTED: similar to ( 617) 3166 478.2 2.5e-132 gi|18606492|gb|AAH23081.1| General transcription f ( 508) 2688 407.7 3.4e-111 gi|81884551|sp|Q6AY96.1|T2FA_RAT General transcrip ( 508) 2688 407.7 3.4e-111 gi|118573900|sp|Q3THK3.1|T2FA_MOUSE General transc ( 508) 2672 405.3 1.7e-110 gi|170284689|gb|AAI61337.1| Unknown (protein for M ( 522) 2551 387.5 4e-105 gi|464522|sp|Q04870.1|T2FA_XENLA General transcrip ( 524) 2425 369.0 1.5e-99 gi|21430981|gb|AAM49800.1| RAP74 subunit of transc ( 524) 2423 368.7 1.9e-99 gi|149028153|gb|EDL83591.1| general transcription ( 468) 1946 298.4 2.4e-78 gi|134023953|gb|AAI35790.1| LOC100124929 protein [ ( 371) 1785 274.6 2.8e-71 gi|126323282|ref|XP_001376622.1| PREDICTED: simila ( 403) 1619 250.2 6.8e-64 gi|55962455|emb|CAI11479.1| novel protein similar ( 536) 1580 244.6 4.4e-62 gi|27735386|gb|AAH41493.1| LOC398325 protein [Xeno ( 343) 1555 240.7 4.2e-61 gi|12850094|dbj|BAB28588.1| unnamed protein produc ( 245) 1528 236.6 5.3e-60 gi|126323278|ref|XP_001376563.1| PREDICTED: simila ( 405) 1453 225.8 1.6e-56 gi|26346919|dbj|BAC37108.1| unnamed protein produc ( 239) 1307 204.0 3.2e-50 gi|28279190|gb|AAH45951.1| General transcription f ( 443) 1214 190.6 6.4e-46 gi|11514677|pdb|1F3U|B Chain B, Crystal Structure ( 171) 1148 180.5 2.9e-43 gi|115747642|ref|XP_001189317.1| PREDICTED: simila ( 490) 1136 179.2 2e-42 gi|91091460|ref|XP_973020.1| PREDICTED: similar to ( 513) 1079 170.8 6.8e-40 gi|156548970|ref|XP_001607159.1| PREDICTED: simila ( 526) 1052 166.9 1.1e-38 gi|194184259|gb|EDW97870.1| GE10218 [Drosophila ya ( 576) 1019 162.1 3.3e-37 gi|190627654|gb|EDV43178.1| GF18359 [Drosophila an ( 577) 1009 160.6 9.3e-37 gi|190650778|gb|EDV48033.1| GG13412 [Drosophila er ( 581) 1008 160.4 1e-36 gi|194133585|gb|EDW55101.1| GM10893 [Drosophila se ( 575) 1005 160.0 1.4e-36 gi|194198295|gb|EDX11871.1| GD19872 [Drosophila si ( 577) 1005 160.0 1.4e-36 gi|12644388|sp|Q05913.3|T2FA_DROME General transcr ( 577) 1001 159.4 2.1e-36 gi|157017946|gb|EAA07870.4| AGAP002779-PA [Anophel ( 564) 942 150.7 8.5e-34 gi|194166729|gb|EDW81630.1| GK12178 [Drosophila wi ( 589) 918 147.2 1e-32 gi|193894943|gb|EDV93809.1| GH19532 [Drosophila gr ( 570) 913 146.5 1.7e-32 gi|193916150|gb|EDW15017.1| GI23011 [Drosophila mo ( 573) 905 145.3 3.8e-32 gi|108880512|gb|EAT44737.1| Transcription initiati ( 569) 903 145.0 4.6e-32 gi|193638923|ref|XP_001946541.1| PREDICTED: simila ( 476) 897 144.0 7.5e-32 gi|194152804|gb|EDW68238.1| GJ24604 [Drosophila vi ( 569) 898 144.2 7.6e-32 gi|94469162|gb|ABF18430.1| transcription initiatio ( 569) 891 143.2 1.6e-31 gi|110768797|ref|XP_001122801.1| PREDICTED: simila ( 449) 886 142.4 2.2e-31 gi|148706272|gb|EDL38219.1| general transcription ( 125) 836 134.4 1.6e-29 gi|194112171|gb|EDW34214.1| GL22130 [Drosophila pe ( 559) 845 136.4 1.7e-29 gi|194112065|gb|EDW34108.1| GL21747 [Drosophila pe ( 516) 747 122.0 3.5e-25 gi|190582008|gb|EDV22082.1| hypothetical protein T ( 509) 678 111.8 4e-22 gi|187036399|emb|CAP24499.1| Hypothetical protein ( 483) 662 109.4 2e-21 >>gi|46397744|sp|P35269.2|T2FA_HUMAN General transcripti (517 aa) initn: 3385 init1: 3385 opt: 3385 Z-score: 2706.0 bits: 510.3 E(): 4.4e-142 Smith-Waterman score: 3385; 100.000% identity (100.000% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::: gi|463 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 480 490 500 510 >>gi|30585087|gb|AAP36816.1| Homo sapiens general transc (518 aa) initn: 3385 init1: 3385 opt: 3385 Z-score: 2706.0 bits: 510.3 E(): 4.4e-142 Smith-Waterman score: 3385; 100.000% identity (100.000% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::: gi|305 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKEL 480 490 500 510 >>gi|35871|emb|CAA45404.1| RAP74 [Homo sapiens] gi|2 (517 aa) initn: 3384 init1: 3384 opt: 3384 Z-score: 2705.2 bits: 510.2 E(): 4.9e-142 Smith-Waterman score: 3384; 99.807% identity (100.000% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|358 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRIPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::: gi|358 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 480 490 500 510 >>gi|48145713|emb|CAG33079.1| GTF2F1 [Homo sapiens] (517 aa) initn: 3842 init1: 3381 opt: 3381 Z-score: 2702.8 bits: 509.7 E(): 6.6e-142 Smith-Waterman score: 3381; 99.807% identity (100.000% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::. gi|481 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKD 480 490 500 510 >>gi|35869|emb|CAA45408.1| RNA polymerase II associated (517 aa) initn: 3381 init1: 3381 opt: 3381 Z-score: 2702.8 bits: 509.7 E(): 6.6e-142 Smith-Waterman score: 3381; 99.807% identity (100.000% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 SSAFFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|358 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::: gi|358 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 480 490 500 510 >>gi|119589505|gb|EAW69099.1| general transcription fact (519 aa) initn: 3363 init1: 3363 opt: 3371 Z-score: 2694.9 bits: 508.3 E(): 1.8e-141 Smith-Waterman score: 3371; 99.615% identity (99.615% similar) in 519 aa overlap (4-520:1-519) 10 20 30 40 50 ef0219 PLPMAAL--GPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKK :::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MAALVSGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKK 10 20 30 40 50 60 70 80 90 100 110 ef0219 IYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKK 60 70 80 90 100 110 120 130 140 150 160 170 ef0219 GGVTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGVTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFS 120 130 140 150 160 170 180 190 200 210 220 230 ef0219 IMQQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IMQQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAK 180 190 200 210 220 230 240 250 260 270 280 290 ef0219 KKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQE 240 250 260 270 280 290 300 310 320 330 340 350 ef0219 EGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDS 300 310 320 330 340 350 360 370 380 390 400 410 ef0219 EASSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EASSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVS 360 370 380 390 400 410 420 430 440 450 460 470 ef0219 EMPAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EMPAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLK 420 430 440 450 460 470 480 490 500 510 520 ef0219 KFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::::: gi|119 KFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 480 490 500 510 >>gi|114674895|ref|XP_512314.2| PREDICTED: general trans (517 aa) initn: 3368 init1: 3368 opt: 3368 Z-score: 2692.5 bits: 507.8 E(): 2.5e-141 Smith-Waterman score: 3368; 99.420% identity (100.000% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|114 PKGVDEQSDSSEESEEEKPPEEEKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::.::::::::::::::::::::.::::::::::::::::::::::::::::: gi|114 PAAKRLRLDAGPQSLSGKSTPQPPSGKTTPSSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::: gi|114 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 480 490 500 510 >>gi|109123096|ref|XP_001087325.1| PREDICTED: general tr (517 aa) initn: 3350 init1: 3350 opt: 3350 Z-score: 2678.2 bits: 505.2 E(): 1.6e-140 Smith-Waterman score: 3350; 98.453% identity (99.807% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|109 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRAPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG .::::::::::::::::::::::::::::::::::::::::::::.::::::: :::::: gi|109 VPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQDEPESKAKPPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :::::::::.:::::::::::::::::.::.::::::::::::::::::::::::::::: gi|109 PAAKRLRLDAGPQSLSGKSTPQPPSGKSTPSSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::.:::::::::: gi|109 QTKKTGLSSEQTVNVLAQILKRLNPERKMVNDKMHFSLKE 480 490 500 510 >>gi|75057902|sp|Q5EA53.1|T2FA_BOVIN General transcripti (517 aa) initn: 3224 init1: 3224 opt: 3224 Z-score: 2577.9 bits: 486.6 E(): 6e-135 Smith-Waterman score: 3224; 95.164% identity (98.646% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::::::::::::::::::::::::::::::::::..::::::::::::::::: gi|750 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNLTTWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|750 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLAKHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK ::::::::::::..::::::.:.::::::::::::::::::: :.::::::::.:::::: gi|750 QQRRLKDQDQDEEDEEKEKRSRKKASELRIHDLEDDLEMSSDDSEASGEEGGRAPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :: .:::::::::::::::::::::::::::::::::::::::::.: :.: :: ::::: gi|750 APPSKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQDELEGKPKATQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 PKGVDEQSESSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM ::::::::::::::::::::::::::::::::::.:.:::::::::::::::::::.:: gi|750 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSTEAGSTSSTLRAAASKLEQGKRTSET 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF ::::::::::::::::::::::: :::.::.::::::::::::::::::::::::::::: gi|750 PAAKRLRLDTGPQSLSGKSTPQPQSGKSTPSSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE :::::::::::::::::::::::::::::::::::::::: gi|750 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 480 490 500 510 >>gi|149716716|ref|XP_001495635.1| PREDICTED: similar to (517 aa) initn: 3182 init1: 3182 opt: 3182 Z-score: 2544.5 bits: 480.4 E(): 4.4e-133 Smith-Waterman score: 3182; 93.424% identity (98.646% similar) in 517 aa overlap (4-520:1-517) 10 20 30 40 50 60 ef0219 PLPMAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY ::::::..::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MAALGPGNQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIY 10 20 30 40 50 70 80 90 100 110 120 ef0219 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGG 60 70 80 90 100 110 130 140 150 160 170 180 ef0219 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIM 120 130 140 150 160 170 190 200 210 220 230 240 ef0219 QQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKK ::::::::::::. :.::.::..::::::::::::::::::: :.::::::::.:::::: gi|149 QQRRLKDQDQDEEGEQKERRGHKKASELRIHDLEDDLEMSSDDSEASGEEGGRAPKAKKK 180 190 200 210 220 230 250 260 270 280 290 300 ef0219 APLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEG :: .:.:::::::::::::::::::::::::::::::::::::::.: :.: :.:::::: gi|149 APPGKAGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQDELEGKPKVPQQEEG 240 250 260 270 280 290 310 320 330 340 350 360 ef0219 PKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA ::::::::.::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|149 PKGVDEQSESSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSDESDSSEESDIDSEA 300 310 320 330 340 350 370 380 390 400 410 420 ef0219 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEM ::::::::::::::::::::::::::::::::::.:...:::::::::.:::::::.:: gi|149 SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSTESANTSSTLRAAATKLEQGKRTSET 360 370 380 390 400 410 430 440 450 460 470 480 ef0219 PAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKF :.:::::::.::::::::::::: :::.::.::::::::::::::::::::::::::::: gi|149 PTAKRLRLDAGPQSLSGKSTPQPQSGKSTPSSGDVQVTEDAVRRYLTRKPMTTKDLLKKF 420 430 440 450 460 470 490 500 510 520 ef0219 QTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE ::::::::::::::::::::::::::::::.::::::::: gi|149 QTKKTGLSSEQTVNVLAQILKRLNPERKMISDKMHFSLKE 480 490 500 510 520 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 07:24:52 2008 done: Fri Aug 8 07:27:09 2008 Total Scan time: 901.790 Total Display time: 0.180 Function used was FASTA [version 34.26.5 April 26, 2007]