hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-07271097/chunk_1/iprscan-20080808-07271097.nocrc
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Query sequence: ef02191
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF05793.3.ls Transcription initiation factor IIF, alph  1025.3          0   1
PF05793.3.fs Transcription initiation factor IIF, alph  1023.3   7.6e-305   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF05793.3.fs   1/1       4   520 .]     1   575 []  1023.3 7.6e-305
PF05793.3.ls   1/1       4   520 .]     1   575 []  1025.3        0

Alignments of top-scoring domains:
PF05793.3.fs: domain 1 of 1, from 4 to 520: score 1023.3, E = 7.6e-305
                   *->sdalGsvsSsqnvtefsvRGkvvpknpskkysvmafnaalkvdfsvW
                      ++alG  +Ssqnvte++vR   vpkn++kky++mafnaa+kv+f++W
     ef02191     4    MAALG--PSSQNVTEYVVR---VPKNTTKKYNIMAFNAADKVNFATW 45   

                   anarGvterdlsikrfivteeempesGaGSEynrslReEarRKKygiiak
                   ++ar  +erdls+k++ ++eeempesGaGSE+nr+lReEarRKKygi++k
     ef02191    46 NQAR--LERDLSNKKI-YQEEEMPESGAGSEFNRKLREEARRKKYGIVLK 92   

                   kyrldnqPWiLevegkeGRqrkykGirEGGvsEnAtYYvftkandgseFe
                   ++r+++qPW+L+v+gk+  +rk+kGi++GGv+En++YY+ft+++dg +Fe
     ef02191    93 EFRPEDQPWLLRVNGKS--GRKFKGIKKGGVTENTSYYIFTQCPDG-AFE 139  

                   AyPvgeWYNFtPiaryKtLtaEEAEeeferRnKvmnhFslmqrrrlkaae
                   A+Pv++WYNFtP+ar++tLtaEEAEee+erRnKv+nhFs+mq+rrlk+++
     ef02191   140 AFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQRRLKDQD 189  

                   ndEaefeeevaklekaggkkkselkikDkDesegsdDeedssdesekede
                   +dE+e+e+     ek+g++k+sel+i+D     ++dD+e+ssd+s++++e
     ef02191   190 QDEDEEEK-----EKRGRRKASELRIHD-----LEDDLEMSSDASDASGE 229  

                   EeeasrKkkkklnaKkgddkkkkkedgdDeAfelDDesdDGDdEGrEvdY
                   E+++++K+kkk++ +kg++kkkkk+++dDeAfe   +sdDGD+EG+EvdY
     ef02191   230 EGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFE---DSDDGDFEGQEVDY 276  

                   tsDseadsddeeerkdkDmkGlapEeeapklvkqdeeeDdEEeseEedge
                   +sD++++s++e+e+k+k    ++++ee+pk+v++++  D++EeseEe+++
     ef02191   277 MSDGSSSSQEEPESKAK----APQQEEGPKGVDEQS--DSSEESEEEKPP 320  

                   ekdgeeeKKlkgkDeapgdkkkkkktDdddesdssedsDistvassdskd
                   e+d+eee+++k++  +p++kk++k  D+++esdsse+sDi+++ass++++
     ef02191   321 EEDKEEEEEKKAP--TPQEKKRRK--DSSEESDSSEESDIDSEASSALFM 366  

                   akKdesnGPpkkkpakpsgsgsrgktrPatpSkdkrksssndrkkaSklP
                   akK++   Ppk +++kpsg++srg++rP+tpS++++++ss++r++aSkl 
     ef02191   367 AKKKT---PPK-RERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKL- 411  

                   tLsteasKrakvesdpkpsrkeeranavkksntPtsakkaspaneistsa
                       e++Kr  v+++p+++r       ++++++P+s++++s++     ++
     ef02191   412 ----EQGKR--VSEMPAAKR-------LRLDTGPQSLSGKSTP-----QP 443  

                   psgaStpsaedegvTEeaVRrYLtrkKPvTTkdLLsKFktKktgLsseed
                   psg++tp+++d++vTE+aVRrYLtr KP+TTkdLL+KF+tKktgLsse++
     ef02191   444 PSGKTTPNSGDVQVTEDAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQT 492  

                   vnalAqILKkInPiqktigdkmyvvLke<-*
                   vn+lAqILK++nP++k+i+dkm+++Lke   
     ef02191   493 VNVLAQILKRLNPERKMINDKMHFSLKE    520  

PF05793.3.ls: domain 1 of 1, from 4 to 520: score 1025.3, E = 0
                   *->sdalGsvsSsqnvtefsvRGkvvpknpskkysvmafnaalkvdfsvW
                      ++alG  +Ssqnvte++vR   vpkn++kky++mafnaa+kv+f++W
     ef02191     4    MAALG--PSSQNVTEYVVR---VPKNTTKKYNIMAFNAADKVNFATW 45   

                   anarGvterdlsikrfivteeempesGaGSEynrslReEarRKKygiiak
                   ++ar  +erdls+k++ ++eeempesGaGSE+nr+lReEarRKKygi++k
     ef02191    46 NQAR--LERDLSNKKI-YQEEEMPESGAGSEFNRKLREEARRKKYGIVLK 92   

                   kyrldnqPWiLevegkeGRqrkykGirEGGvsEnAtYYvftkandgseFe
                   ++r+++qPW+L+v+gk+  +rk+kGi++GGv+En++YY+ft+++dg +Fe
     ef02191    93 EFRPEDQPWLLRVNGKS--GRKFKGIKKGGVTENTSYYIFTQCPDG-AFE 139  

                   AyPvgeWYNFtPiaryKtLtaEEAEeeferRnKvmnhFslmqrrrlkaae
                   A+Pv++WYNFtP+ar++tLtaEEAEee+erRnKv+nhFs+mq+rrlk+++
     ef02191   140 AFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQRRLKDQD 189  

                   ndEaefeeevaklekaggkkkselkikDkDesegsdDeedssdesekede
                   +dE+e+e+     ek+g++k+sel+i+D     ++dD+e+ssd+s++++e
     ef02191   190 QDEDEEEK-----EKRGRRKASELRIHD-----LEDDLEMSSDASDASGE 229  

                   EeeasrKkkkklnaKkgddkkkkkedgdDeAfelDDesdDGDdEGrEvdY
                   E+++++K+kkk++ +kg++kkkkk+++dDeAfe   +sdDGD+EG+EvdY
     ef02191   230 EGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFE---DSDDGDFEGQEVDY 276  

                   tsDseadsddeeerkdkDmkGlapEeeapklvkqdeeeDdEEeseEedge
                   +sD++++s++e+e+k+k    ++++ee+pk+v++++  D++EeseEe+++
     ef02191   277 MSDGSSSSQEEPESKAK----APQQEEGPKGVDEQS--DSSEESEEEKPP 320  

                   ekdgeeeKKlkgkDeapgdkkkkkktDdddesdssedsDistvassdskd
                   e+d+eee+++k++  +p++kk++k  D+++esdsse+sDi+++ass++++
     ef02191   321 EEDKEEEEEKKAP--TPQEKKRRK--DSSEESDSSEESDIDSEASSALFM 366  

                   akKdesnGPpkkkpakpsgsgsrgktrPatpSkdkrksssndrkkaSklP
                   akK++   Ppk +++kpsg++srg++rP+tpS++++++ss++r++aSkl 
     ef02191   367 AKKKT---PPK-RERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKL- 411  

                   tLsteasKrakvesdpkpsrkeeranavkksntPtsakkaspaneistsa
                       e++Kr  v+++p+++r       ++++++P+s++++s++     ++
     ef02191   412 ----EQGKR--VSEMPAAKR-------LRLDTGPQSLSGKSTP-----QP 443  

                   psgaStpsaedegvTEeaVRrYLtrkKPvTTkdLLsKFktKktgLsseed
                   psg++tp+++d++vTE+aVRrYLtr KP+TTkdLL+KF+tKktgLsse++
     ef02191   444 PSGKTTPNSGDVQVTEDAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQT 492  

                   vnalAqILKkInPiqktigdkmyvvLke<-*
                   vn+lAqILK++nP++k+i+dkm+++Lke   
     ef02191   493 VNVLAQILKRLNPERKMINDKMHFSLKE    520  

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