hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-04363541/chunk_1/iprscan-20090618-04363541.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ef02335
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00001.12.fs   7 transmembrane receptor (rhodopsin f   187.5      2e-62   1
PF00001.12.ls   7 transmembrane receptor (rhodopsin f   189.4    8.2e-54   1
PF01748.15.ls   Caenorhabditis serpentine receptor-li   -41.8      0.027   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs     1/1     118   367 ..     1   272 []   187.5    2e-62
PF00001.12.ls     1/1     118   367 ..     1   272 []   189.4  8.2e-54
PF01748.15.ls     1/1     136   384 ..     1   261 []   -41.8    0.027

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 118 to 367: score 187.5, E = 2e-62
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      +N++V+l+i++tkk ++p+++fi+NLA++DLL +++ +   l+  ++
     ef02335   118    ENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGAT 164  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     ++ + +a + l  ++++v++ aS+++L+aI+i+RY++  +   ++ ++
     ef02335   165 --TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSN 212  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   r +++i+++Wv++l+l+ +p+++ w+  ++         +C+   p
     ef02335   213 N--FRLFLLISACWVISLILGGLPIMG-WNCISA-------LSSCSTVLP 252  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                     +          +++l+++ +F l ll i+++Y+rI+  +r r r++++
     ef02335   253 LYH---------KHYILFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTF 293  

                   .......kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsii
                   +++ ++  ++s k   ++kt+++v++vF+ CW+P+fi+llld+ c+    
     ef02335   294 rkniskaSRSSEKSLALLKTVIIVLSVFIACWAPLFILLLLDVGCkVK-- 341  

                   msssCelervlptallvtlwLayvNsclNPiIY<-*
                          ++ + +   ++l+La++Ns  NPiIY   
     ef02335   342 -------TCDILFRAEYFLVLAVLNSGTNPIIY    367  

PF00001.12.ls: domain 1 of 1, from 118 to 367: score 189.4, E = 8.2e-54
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      +N++V+l+i++tkk ++p+++fi+NLA++DLL +++ +   l+  ++
     ef02335   118    ENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGAT 164  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     ++ + +a + l  ++++v++ aS+++L+aI+i+RY++  +   ++ ++
     ef02335   165 --TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSN 212  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   r +++i+++Wv++l+l+ +p+++ w+  ++         +C+   p
     ef02335   213 N--FRLFLLISACWVISLILGGLPIMG-WNCISA-------LSSCSTVLP 252  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                     +          +++l+++ +F l ll i+++Y+rI+  +r r r++++
     ef02335   253 LYH---------KHYILFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTF 293  

                   .......kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsii
                   +++ ++  ++s k   ++kt+++v++vF+ CW+P+fi+llld+ c+    
     ef02335   294 rkniskaSRSSEKSLALLKTVIIVLSVFIACWAPLFILLLLDVGCkVK-- 341  

                   msssCelervlptallvtlwLayvNsclNPiIY<-*
                          ++ + +   ++l+La++Ns  NPiIY   
     ef02335   342 -------TCDILFRAEYFLVLAVLNSGTNPIIY    367  

PF01748.15.ls: domain 1 of 1, from 136 to 384: score -41.8, E = 0.027
                   *->sykLmyfrfiiDilytfinsiltgyliiigisycflkypnlifilGw
                       y  +  +++ D+l+++ ++ +++   ++ +       +++    + 
     ef02335   136    MYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTP--AQWF----LR 176  

                   pslnlwtlyirctlalllsieRvlaiffPifryhnlfqklstyiililil
                    ++++ +l+++ +  l+++ieR++ + +  +  +   + + +++i ++ +
     ef02335   177 EGSMFVALSASVFSLLAIAIERYITMLKMKL-HNGSNNFRLFLLISACWV 225  

                   llilydqyilfftcpvvfdsplnckwffdcsilPsfFnkcyseYwntpet
                   ++++++ + +++  +++     +c     +++         ++ ++++ t
     ef02335   226 ISLILGGLPIMGWNCISA--LSSC-STVLPLY---------HKHYILFCT 263  

                   minnflivvltcalLyirLfiiiwkkfkktnnvsskklskanr.....la
                     ++ l+ ++ + +Ly r + ++++  +  +  + k +ska+r+++++la
     ef02335   264 -TVFTLLLLSIV-ILYCRIYSLVRTRSRRLT--FRKNISKASRsseksLA 309  

                   llQstiQDiclFnalpafiyvyfqff..............evpnwmlivg
                   ll ++i       +l++fi  + ++f     + + + ++ ++ +    ++
     ef02335   310 LLKTVI------IVLSVFIACWAPLFilllldvgckvktcDILFR-AEYF 352  

                   pqiawqkssGcpieiylifNrtiRkkvlkllks<-*
                     ++  ++sG +++iy   N+ +R+ +++ +++   
     ef02335   353 L-VLAVLNSGTNPIIYTLTNKEMRRAFIRIMSC    384  

//