hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-07500100/chunk_1/iprscan-20080808-07500100.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ef02778
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00225.13.ls  Kinesin motor domain                     575.2   5.7e-170   1
PF00225.13.fs  Kinesin motor domain                     573.6   1.8e-169   1
PF04508.3.ls   Viral A-type inclusion protein repeat     57.2      5e-14  16
PF04508.3.fs   Viral A-type inclusion protein repeat     43.2      6e-11  11
PF00170.11.fs  bZIP transcription factor                 31.8    2.2e-08  12
PF02370.7.ls   M protein repeat                          37.0    6.1e-08  12
PF01920.10.fs  Prefoldin subunit                         23.2    8.3e-06   7
PF02996.8.fs   Prefoldin subunit                         21.5    1.6e-05   7
PF06696.2.ls   Streptococcal surface antigen repeat      28.9    1.7e-05   8
PF02524.5.ls   KID repeat                                26.7    7.4e-05  10
PF02370.7.fs   M protein repeat                          17.4     0.0018   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      17   335 ..     1   424 []   573.6 1.8e-169
PF00225.13.ls   1/1      17   335 ..     1   424 []   575.2 5.7e-170
PF02524.5.fs   2/5    1139  1149 ..     1    11 []     4.9      6.7

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 17 to 335: score 573.6, E = 1.8e-169
                   *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe
                      RvRPln+rE+s g++ +v+  ++++++vi + ++ k+F FD+VF+ +
     ef02778    17    RVRPLNSREESLGETAQVY--WKTDNNVIYQvDGSKSFNFDRVFHGN 61   

                   atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe
                    t         ++ vye++a+p+++s+++GyN+tIFAYGQT SGKTYTM+
     ef02778    62 ET---------TKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 102  

                   GstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKPk
                   Gs                 e++ G+iPRa++d+F++i++ ++r       
     ef02778   103 GS-----------------EDHLGVIPRAIHDIFQKIKKFPDR------- 128  

                   lnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEki
                                                     ef+++vSy+EIYNE+i
     ef02778   129 ----------------------------------EFLLRVSYMEIYNETI 144  

                   rDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLteve
                    DLL+ +             +k kpL ireD++r+     vyV +Lte++
     ef02778   145 TDLLCGT-------------QKMKPLIIREDVNRN-----VYVADLTEEV 176  

                   VtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdttgs
                   V+++e++l+++ +G+k+R+ ++TkmN++SSRSH+iF+ ++e+r+++   +
     ef02778   177 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN 226  

                   vvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanINk
                   ++ +        v+vs LnLVDLAGSERa++Tga  Ag r LkE++nIN+
     ef02778   227 CEGS--------VKVSHLNLVDLAGSERAAQTGA--AGVR-LKEGCNINR 265  

                   SLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIani
                   SL +LG+VI +L+d+q  ++i YRDSKLTr+LQ+SLGG  N+KT +I++i
     ef02778   266 SLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGG--NAKTRIICTI 313  

                   SPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   +P       +++ETL  L+FAs AK  k   
     ef02778   314 TPV------SFDETLTALQFASTAKYMK    335  

PF00225.13.ls: domain 1 of 1, from 17 to 335: score 575.2, E = 5.7e-170
                   *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe
                      RvRPln+rE+s g++ +v+  ++++++vi + ++ k+F FD+VF+ +
     ef02778    17    RVRPLNSREESLGETAQVY--WKTDNNVIYQvDGSKSFNFDRVFHGN 61   

                   atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe
                    t         ++ vye++a+p+++s+++GyN+tIFAYGQT SGKTYTM+
     ef02778    62 ET---------TKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 102  

                   GstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKPk
                   Gs                 e++ G+iPRa++d+F++i++ ++r       
     ef02778   103 GS-----------------EDHLGVIPRAIHDIFQKIKKFPDR------- 128  

                   lnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEki
                                                     ef+++vSy+EIYNE+i
     ef02778   129 ----------------------------------EFLLRVSYMEIYNETI 144  

                   rDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLteve
                    DLL+ +             +k kpL ireD++r+     vyV +Lte++
     ef02778   145 TDLLCGT-------------QKMKPLIIREDVNRN-----VYVADLTEEV 176  

                   VtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdttgs
                   V+++e++l+++ +G+k+R+ ++TkmN++SSRSH+iF+ ++e+r+++   +
     ef02778   177 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN 226  

                   vvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanINk
                   ++ +        v+vs LnLVDLAGSERa++Tga  Ag r LkE++nIN+
     ef02778   227 CEGS--------VKVSHLNLVDLAGSERAAQTGA--AGVR-LKEGCNINR 265  

                   SLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIani
                   SL +LG+VI +L+d+q  ++i YRDSKLTr+LQ+SLGG  N+KT +I++i
     ef02778   266 SLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGG--NAKTRIICTI 313  

                   SPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   +P       +++ETL  L+FAs AK  k   
     ef02778   314 TPV------SFDETLTALQFASTAKYMK    335  

PF02524.5.fs: domain 2 of 5, from 1139 to 1149: score 4.9, E = 6.7
                   *->KIdsVekeLkk<-*
                      +I+++++eLk+   
     ef02778  1139    EIENLKNELKN    1149 

//