hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-07500100/chunk_1/iprscan-20080808-07500100.nocrc
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Query sequence: ef02778
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 609.6   1.1e-178   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1       9   342 ..     1   404 []   609.6 1.1e-178

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 9 to 342: score 609.6, E = 1.1e-178
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                      +g++ V+vRv   RPln rE+s +    +  +v+++++++v+ + ++
     ef02778     9    EGAVAVCVRV---RPLNSREESLG----ETAQVYWktdnNVIYQvdg 48   

                   ...FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYG
                   +++F FD+VF      + + +++ V+ee+aaP++dsa++GYN+ TIFAYG
     ef02778    49 sksFNFDRVF------HGNETTKNVYEEIAAPIIDSAIQGYNG-TIFAYG 91   

                   QTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledlFekide..
                   QT SGKTyTM+G++               d++G+IPRa++d+F+ki++ +
     ef02778    92 QTASGKTYTMMGSE---------------DHLGVIPRAIHDIFQKIKKfp 126  

                   ...fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkkLrirEdk
                   +++f+++vSy+EIYNE+i DLL+ ++++             k+L irEd 
     ef02778   127 dreFLLRVSYMEIYNETITDLLCGTQKM-------------KPLIIREDV 163  

                   ngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGnknRtvaa
                   n               ++vyV++Lte++V+++e++l+++ +G+k+R+ ++
     ef02778   164 N---------------RNVYVADLTEEVVYTSEMALKWITKGEKSRHYGE 198  

                   TkmNeeSSRSHaiFtitleqkeklepiadektesstnegteqiksskLnL
                   TkmN++SSRSH+iF+ +le++ek+ep+++          ++++k+s LnL
     ef02778   199 TKMNQRSSRSHTIFRMILESREKGEPSNC----------EGSVKVSHLNL 238  

                   VDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInALaddshdsae
                   VDLAGSERa++Tg  a+G+RLkE++nIN+SL+ LG+VI +L+d       
     ef02778   239 VDLAGSERAAQTG--AAGVRLKEGCNINRSLFILGQVIKKLSD------- 279  

                   seatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSPsssnyeE
                          g+  ++I YRDSKLTr+LQ+SLGGN+KT++I+++ P   +++E
     ef02778   280 -------GQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDE 320  

                   TlsTLrFAsRaksIknkpavne<-*
                   Tl++L+FAs ak  kn+p vne   
     ef02778   321 TLTALQFASTAKYMKNTPYVNE    342  

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