hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-08253873/chunk_1/iprscan-20080808-08253873.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef03333 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00216 658.3 2.4e-193 4 SM00327 351.4 5.8e-101 3 SM00214 233.2 2.1e-65 5 SM00041 132.2 5.5e-35 1 SM00215 61.2 1.3e-13 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00216 1/4 45 204 .. 1 185 [] 140.3 2e-37 SM00215 1/2 376 444 .. 1 105 [] 40.0 3.3e-07 SM00214 1/5 376 436 .. 1 75 [] 9.6 0.94 SM00216 2/4 403 566 .. 1 185 [] 201.3 8.8e-56 SM00214 2/5 855 897 .. 1 75 [] 5.9 1.9 SM00215 2/2 855 924 .. 1 105 [] 21.2 0.0091 SM00216 3/4 882 1038 .. 1 185 [] 150.2 2.1e-40 SM00327 1/3 1301 1484 .. 1 193 [] 106.7 2.6e-27 SM00327 2/3 1522 1695 .. 1 193 [] 115.0 8.5e-30 SM00327 3/3 1715 1889 .. 1 193 [] 129.7 3.2e-34 SM00216 4/4 1964 2127 .. 1 185 [] 166.5 2.6e-45 SM00214 3/5 2283 2351 .. 1 75 [] 82.2 6.1e-20 SM00214 4/5 2457 2520 .. 1 75 [] 71.8 8.5e-17 SM00214 5/5 2608 2670 .. 1 75 [] 63.7 2.3e-14 SM00041 1/1 2753 2838 .. 1 94 [] 132.2 5.5e-35 Alignments of top-scoring domains: SM00216: domain 1 of 4, from 45 to 204: score 140.3, E = 2e-37 *->wsctqeecagr...atCsvsGdphytTFDGlkYtfpmpGnCyYvLaq + + e ++gr+++a+Cs++G ++TFDG++Y+f G C+Y+La ef03333 45 GTLCAEGTRGRsstARCSLFGSDFVNTFDGSMYSF--AGYCSYLLAG 89 dyPGsCssepsegsFsVllknvpcggsgktdklatclksvkvelgdieie C+ + sFs++++ + g+ + sv++ ++ + + ef03333 90 G----CQKR----SFSIIGD-FQNGK--------RVSLSVYLGEFFDIHL 122 lkggkvtvngqrtpkvslPyktsdgsirierrsagggylvvitslglrvq ++g+vt qr vs Py +++++++ e g+y ++ +g ++ ef03333 123 FVNGTVTQGDQR---VSMPYASKGLYLETE----AGYYKLSGEAYG--FV 163 vtfDgktllsvqlpssyrgkTcGLCGnfdgepeDDfrtpdG<-* +++Dg+++++v l+++y++kTcGLCGnf+ +eDDf+t +G ef03333 164 ARIDGSGNFQVLLSDRYFNKTCGLCGNFNIFAEDDFMTQEG 204 SM00215: domain 1 of 2, from 376 to 444: score 40.0, E = 3.3e-07 *->CqNAvnnGsyYppLNkGakWdDiALtGRtEDtdDCsnrCtClnGrvs C v +G+ Ypp G + + DC n+C C n+ ++ ef03333 376 C---VHSGKRYPP---GTSLS-----------RDC-NTCICRNSQWI 404 lCtkvwCgpkpClLhgslsKSSnlsgeCplgqgcvpslsdqKqYtvHGDC C+++ C++ C + + +++ +d + +t G C ef03333 405 -CSNEECPGE-----------------CLVTGQSHFKSFDNRYFTFSGIC 436 fsvltsPC<-* + l + C ef03333 437 QYLLARDC 444 SM00214: domain 1 of 5, from 376 to 436: score 9.6, E = 0.94 *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc Cvh +G +y++g++ d C++C C ++ + C+ eCp + ef03333 376 CVH-SGKRYPPGTSLSRD--CNTCICRNS-QWICSNEECPGE----- 413 kdsdCpnperlpavaekppGeCCpey.rC<-* C + + + + ++++C ef03333 414 ----CLVTGQ--SHFKSFDNRYFTFSgIC 436 SM00216: domain 2 of 4, from 403 to 566: score 201.3, E = 8.8e-56 *->wsctqeecagratCsvsGdphytTFDGlkYtfpmpGnCyYvLaqdyP w c++eec+g +C v G++h++ FD++++tf G C+Y+La+d ef03333 403 WICSNEECPG--ECLVTGQSHFKSFDNRYFTF--SGICQYLLARD-- 443 GsCssepsegsFsVllknvpcggsgktdklatclksvkvelgdieielk. C+++ sFs+ ++ v+c ++ + a+c++sv+v+l++ l++ ef03333 444 --CQDH----SFSIVIETVQCADDRD----AVCTRSVTVRLPGLHNSLVk 483 ...ggkvtvngqrtpkvslPyktsdgsirierrsagggylvvitslglrv ++g v +gq+ v+lP+ ++d++i++++ + + ++ +++ + ef03333 484 lkhGAGVAMDGQD---VQLPLLKGDLRIQRTV----TASVRLSYGED--L 524 qvtfDgktllsvqlpssyrgkTcGLCGnfdgepeDDfrtpdG<-* q+ +Dg+++l v+l++ y+gkTcGLCGn++g++ DDf+tp+G ef03333 525 QMDWDGRGRLLVKLSPVYAGKTCGLCGNYNGNQGDDFLTPSG 566 SM00214: domain 2 of 5, from 855 to 897: score 5.9, E = 1.9 *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc C+h G +y++get+k + C++C+C d k C++ C + ef03333 855 CFH-QGKEYAPGETVKIG--CNTCVCRDR-KWNCTDHVCDAT----- 892 kdsdCpnperlpavaekppGeCCpeyrC<-* C+ + ef03333 893 ----CSTI---------------G---- 897 SM00215: domain 2 of 2, from 855 to 924: score 21.2, E = 0.0091 *->CqNAvnnGsyYppLNkGakWdDiALtGRtEDtdDCsnrCtClnGrvs C + G+ Y+p G + + C n+C+C ++++ ef03333 855 C---FHQGKEYAP---GETVK-----------IGC-NTCVCRDRKWN 883 lCtkvwCgpkpClLhgslsKSSnlsgeCplgqgcvpslsdqKqYtvHGDC Ct C + C+ + ++ ++d+ +Y G+C ef03333 884 -CTDHVCDAT-----------------CSTIGMAHYLTFDGLKYLFPGEC 915 fsvlts.PC<-* +vl+ ++C ef03333 916 QYVLVQdYC 924 SM00216: domain 3 of 4, from 882 to 1038: score 150.2, E = 2.1e-40 *->wsctqeecagratCsvsGdphytTFDGlkYtfpmpGnCyYvLaqdyP w ct+++c++ tCs+ G hy TFDGlkY f pG+C+YvL+qdy ef03333 882 WNCTDHVCDA--TCSTIGMAHYLTFDGLKYLF--PGECQYVLVQDY- 923 GsCssepsegsFsVllknvpcggsgktdklatclksvkvelgdieielkg C+s+p+ +F++l+ n+ c+ + + c k v++ + + eiel ef03333 924 --CGSNPG--TFRILVGNKGCSHPS-----VKCKKRVTILVEGGEIELF- 963 gkvtvngqrtpkvslPyktsdgsirierrsagggylvvitslglrvqvtf +g++ +v+ P k+++ ++e +g y+++ ++ ++v + ef03333 964 -----DGEV--NVKRPMKDETHFEVVE----SGRYIILLLGKA--LSVVW 1000 DgktllsvqlpssyrgkTcGLCGnfdgepeDDfrtpdG<-* D+ +sv l ++y+ k+cGLCGnfdg + +D+++++ ef03333 1001 DRHLSISVVLKQTYQEKVCGLCGNFDGIQNNDLTSSNL 1038 SM00327: domain 1 of 3, from 1301 to 1484: score 106.7, E = 2.6e-27 *->plDvvfllDgSgSmggnrfekvkefv.klveqld....gdrvglvqF lD+vfllDgS+ ++ fe k+fv +++e+l+ +++ +rv++v + ef03333 1301 LLDLVFLLDGSSRLSEAEFEVLKAFVvDMMERLRisqkWVRVAVVEY 1347 ssdvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyal ++ + +++l++ +++++l+++ +++y +++ ++ + L+y l ef03333 1348 HDGSHAYIGLKdRKRPSELRRIASQVKY------AGSQVASTSeVLKYTL 1391 enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak ++fs+ ++ + ++ l+l+++ e+++ +++ + ++ ef03333 1392 FQIFSKIDRpEA----------SRIALLLMASQEPQR---MSRNFVRYVQ 1428 elkrsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslld lk+++v+v+ +g+g++ + ++++ i ++++ +f+ +s+v++l++++d ef03333 1429 GLKKKKVIVIPVGIGPHaNLkQIRLIEKQApENKAFV-LSSVDELEQQRD 1477 llidlll<-* ++++ l+ ef03333 1478 EIVSYLC 1484 SM00327: domain 2 of 3, from 1522 to 1695: score 115.0, E = 8.5e-30 *->plDvvfllDgSgSmggnrfekvkefv.klveqld....gdrvglvqF lDv f+l gS +g+ +f++ kef++++++++d ++++++v ++q+ ef03333 1522 VLDVAFVLEGSDKIGEADFNRSKEFMeEVIQRMDvgqdSIHVTVLQY 1568 ssdvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyal s v+ve p+ ++qsk+++l+++++++y ++g Tn+g AL+y ef03333 1569 SYMVTVEYPFSeAQSKGDILQRVREIRY------QGGNRTNTGlALRYLS 1612 enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak ++ f s+g+r++a p+++ ++T G++ + + +k ef03333 1613 DHSFLVSQGdREQA---------PNLVYMVT-GNPAS---------DEIK 1643 elkrsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslld +l + ++v+ igvg++ + +el++i ++ + ++d+e+lp+++ ef03333 1644 RLPGD-IQVVPIGVGPNaNVqELERIGWPNaPIL----IQDFETLPREAP 1688 llidlll<-* +l+ + + ef03333 1689 DLVLQRC 1695 SM00327: domain 3 of 3, from 1715 to 1889: score 129.7, E = 3.2e-34 *->plDvvfllDgSgSmggnrfekvkefv.klveqld....gdrvglvqF plDv++llDgS+S + f+++k+f+++++++ + +++ ++v+++q+ ef03333 1715 PLDVILLLDGSSSFPASYFDEMKSFAkAFISKANigprLTQVSVLQY 1761 ssdvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyal +s +++ +p n + k++ll+ ++ +++ gg++ +g+AL +a+ ef03333 1762 GSITTIDVPWNvVPEKAHLLSLVDVMQR-------EGGPSQIGdALGFAV 1804 enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak ++l se++g r+ga ++ v+il+TD + + aa+ ef03333 1805 RYLTSEMHGaRPGA--------SKAVVILVTDVSVD-------SVDAAAD 1839 elkrsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslld ++++++v+vf ig+g+ d +l+++a++++ s+v+ l+++ d ef03333 1840 AARSNRVTVFPIGIGDRyDAaQLRILAGPAgD-------SNVVKLQRIED 1882 llidlll<-* l + l ef03333 1883 LPTMVTL 1889 SM00216: domain 4 of 4, from 1964 to 2127: score 166.5, E = 2.6e-45 *->wsctqeecagratCsvsGdphytTFDGlkYtfpmpGnCyYvLaqdyP ++c +++++++ +C++s+++h++TFDG ++ +G+C+YvL q ef03333 1964 ETCGCRWTCPC-VCTGSSTRHIVTFDGQNFKL--TGSCSYVLFQN-- 2005 GsCssepsegsFsVllknvpcggsgktdklatclksvkvelgdieielk. +++ ++ V+l+n+ c+++++ c+ks+ v++ ++el++ ef03333 2006 ---KEQ----DLEVILHNGACSPGAR----QGCMKSIEVKHSALSVELHs 2044 ggkvtvngqrtpkvslPyktsdgsirierrsagggylvvitslglrvqvt +++vtvng+ vs+Py+ ++ +++++ +++ v +++lg + t ef03333 2045 DMEVTVNGRL---VSVPYVGGNMEVNVYG---AIMHEVRFNHLG--HIFT 2086 fDgktl.lsvqlps.syrgkTcGLCGnfdgepeDDfrtpdG<-* f+++++++++ql++++++ kT+GLCG +d + ++Df+++dG ef03333 2087 FTPQNNeFQLQLSPkTFASKTYGLCGICDENGANDFMLRDG 2127 SM00214: domain 3 of 5, from 2283 to 2351: score 82.2, E = 6.1e-20 *->CvhpnGevyrdgetWkpdk.pCqiCtCldgekvlCdkveCppppslp C++++G++++ e W pd++pCqiCtCl+g+kv C+ +Cp++++++ ef03333 2283 CIGEDGVQHQFLEAWVPDHqPCQICTCLSGRKVNCTTQPCPTAKAPT 2329 ckdsdCpnperlpavaekppGeCCpeyrC<-* c+ C+ +++ +++ ++CCpey C ef03333 2330 CG--LCEVARL-----RQNADQCCPEYEC 2351 SM00214: domain 4 of 5, from 2457 to 2520: score 71.8, E = 8.5e-17 *->CvhpnGevyrdgetWkpdkpCqiCtCldge.......kvlCdkveCp Cvh ++y++g++W+++ C++CtC+d+e+ + ++++C++++C+ ef03333 2457 CVH-RSTIYPVGQFWEEG--CDVCTCTDMEdavmglrVAQCSQKPCE 2500 pppslpckdsdCpnperlpavaekppGeCCpeyrC<-* ++ C +++++ + ++GeCC+ rC ef03333 2501 DS---------CRSGFTY----VLHEGECCG--RC 2520 SM00214: domain 5 of 5, from 2608 to 2670: score 63.7, E = 2.3e-14 *->CvhpnGevyrdgetWkpdkpCqiCtCldge.kvlCdkveCppppslp C+ nG+v+ +g t++ d C++C+C+ ++++++ +k+eC +++ ef03333 2608 CML-NGTVIGPGKTVMID-VCTTCRCMVQVgVISGFKLECRKTT--- 2649 ckdsdCpnperlpavaekppGeCCpeyrC<-* c+ Cp ++++ e++ GeCC+ rC ef03333 2650 CN--PCPLGYKE----ENNTGECCG--RC 2670 SM00041: domain 1 of 1, from 2753 to 2838: score 132.2, E = 5.5e-35 *->kspvrqtityngCssnqpvklafCeGkCgsasraedvmysieaqdvd ++++ q++++ C+s+++v++++C+GkC s+ +mysi+++dv+ ef03333 2753 ITARLQYVKVGSCKSEVEVDIHYCQGKCASK-----AMYSIDINDVQ 2794 hsdCsCCqpektktrkVrLrCpdGstgvtktrvthiesCgCestkCp<-* ++ CsCC+p++t++++V L+C++Gs+ v+++ v + ++C+C+++kC+ ef03333 2795 DQ-CSCCSPTRTEPMQVALHCTNGSV-VYHE-VLNAMECKCSPRKCS 2838 //