hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-04432402/chunk_1/iprscan-20090618-04432402.nocrc
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Query sequence: ef03452
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00170.11.fs bZIP transcription factor                       62.3    4.8e-17   1
PF00170.11.ls bZIP transcription factor                       64.3    3.7e-16   1
PF07716.5.fs Basic region leucine zipper                     38.6    1.4e-09   1
PF07716.5.ls Basic region leucine zipper                     40.6      5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00170.11.fs   1/1     301   365 ..     1    65 []    62.3  4.8e-17
PF07716.5.fs   1/1     301   355 ..     1    57 []    38.6  1.4e-09
PF00170.11.ls   1/1     301   365 ..     1    65 []    64.3  3.7e-16
PF07716.5.ls   1/1     301   355 ..     1    57 []    40.6    5e-09

Alignments of top-scoring domains:
PF00170.11.fs: domain 1 of 1, from 301 to 365: score 62.3, E = 4.8e-17
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      ek+lK+ rRk+kN+++A++sR++K+++++ Le kve+ ++eN +Lrk
     ef03452   301    EKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRK 347  

                   elerLkkevakLksenee<-*
                   ++e L++++  L++++ +   
     ef03452   348 KVEVLENTNRTLLQQLQK    365  

PF07716.5.fs: domain 1 of 1, from 301 to 355: score 38.6, E = 1.4e-09
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      +++ ++ rR+++N ++A+ sR KkK++++ le++v+    eN +L  
     ef03452   301    EKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLEL-- 345  

                   rqkveqLekE<-*
                   r kve Le+    
     ef03452   346 RKKVEVLENT    355  

PF00170.11.ls: domain 1 of 1, from 301 to 365: score 64.3, E = 3.7e-16
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      ek+lK+ rRk+kN+++A++sR++K+++++ Le kve+ ++eN +Lrk
     ef03452   301    EKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRK 347  

                   elerLkkevakLksenee<-*
                   ++e L++++  L++++ +   
     ef03452   348 KVEVLENTNRTLLQQLQK    365  

PF07716.5.ls: domain 1 of 1, from 301 to 355: score 40.6, E = 5e-09
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      +++ ++ rR+++N ++A+ sR KkK++++ le++v+    eN +L  
     ef03452   301    EKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLEL-- 345  

                   rqkveqLekE<-*
                   r kve Le+    
     ef03452   346 RKKVEVLENT    355  

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