hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-08332798/chunk_1/iprscan-20080808-08332798.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef03457 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00179 814.7 2e-240 18 SM00181 501.2 4.6e-146 20 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/20 69 98 .. 1 32 [] 17.8 1.5 SM00181 2/20 278 307 .. 1 32 [] 21.6 0.11 SM00179 1/18 501 541 .. 1 34 [] 49.7 3.9e-10 SM00181 3/20 504 541 .. 1 32 [] 29.8 0.00038 SM00179 2/18 723 765 .. 1 34 [] 33.4 3e-05 SM00181 4/20 726 765 .. 1 32 [] 30.9 0.00018 SM00179 3/18 766 808 .. 1 34 [] 51.7 9.6e-11 SM00181 5/20 769 808 .. 1 32 [] 31.2 0.00014 SM00179 4/18 809 848 .. 1 34 [] 52.9 4.1e-11 SM00181 6/20 812 848 .. 1 32 [] 29.7 0.00041 SM00179 5/18 849 888 .. 1 34 [] 49.9 3.3e-10 SM00181 7/20 852 888 .. 1 32 [] 27.3 0.0021 SM00179 6/18 889 929 .. 1 34 [] 54.8 1.1e-11 SM00181 8/20 892 929 .. 1 32 [] 28.2 0.0012 SM00179 7/18 930 971 .. 1 34 [] 41.3 1.3e-07 SM00181 9/20 933 971 .. 1 32 [] 16.7 3.2 SM00179 8/18 972 1013 .. 1 34 [] 43.1 3.7e-08 SM00181 10/20 975 1013 .. 1 32 [] 22.2 0.075 SM00179 9/18 1014 1054 .. 1 34 [] 54.3 1.6e-11 SM00181 11/20 1017 1054 .. 1 32 [] 31.9 8.9e-05 SM00179 10/18 1055 1096 .. 1 34 [] 50.8 1.7e-10 SM00181 12/20 1058 1096 .. 1 32 [] 25.1 0.0096 SM00179 11/18 1097 1137 .. 1 34 [] 48.7 7.8e-10 SM00181 13/20 1100 1137 .. 1 32 [] 24.4 0.016 SM00179 12/18 1138 1181 .. 1 34 [] 43.3 3.3e-08 SM00181 14/20 1141 1181 .. 1 32 [] 12.1 22 SM00179 13/18 1182 1223 .. 1 34 [] 42.1 7.3e-08 SM00181 15/20 1185 1223 .. 1 32 [] 24.7 0.013 SM00179 14/18 1224 1266 .. 1 34 [] 35.1 9.3e-06 SM00181 16/20 1227 1266 .. 1 32 [] 11.8 23 SM00179 15/18 1364 1406 .. 1 34 [] 47.4 1.9e-09 SM00181 17/20 1367 1406 .. 1 32 [] 30.9 0.00017 SM00179 16/18 1407 1446 .. 1 34 [] 43.8 2.2e-08 SM00181 18/20 1410 1446 .. 1 32 [] 25.8 0.0059 SM00179 17/18 1612 1652 .. 1 34 [] 20.3 0.0052 SM00181 19/20 1615 1652 .. 1 32 [] 32.6 5.4e-05 SM00179 18/18 1653 1697 .. 1 34 [] 52.1 7.2e-11 SM00181 20/20 1656 1697 .. 1 32 [] 26.5 0.0036 Alignments of top-scoring domains: SM00181: domain 1 of 20, from 69 to 98: score 17.8, E = 1.5 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C++pC+n G C + C C+ G++g rCe ef03457 69 VCEpPCQNR-----GSCSrPQLCvCR-SGFRGaRCE 98 SM00181: domain 2 of 20, from 278 to 307: score 21.6, E = 0.11 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C+ pC nG G+Ci+ +C Cp + tg+ C ef03457 278 FCQiPCLNG-----GRCIgRDECwCP-ANSTGkFCH 307 SM00179: domain 1 of 18, from 501 to 541: score 49.7, E = 3.9e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- Di+EC + ++C + C+N+ GSY C+C+pG + ++++ +C+ ef03457 501 DINECltlgLCKD----AECVNtRGSYLCtCRPGLMldpsrSRCV 541 * ef03457 - - SM00181: domain 3 of 20, from 504 to 541: score 29.8, E = 0.00038 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++ + C ++C+++++sy C+C+ pG +++++++rC+ ef03457 504 ECLtlgLCKD------AECVntrgSYLCtCR-PGLMLdpsrsRCV 541 * ef03457 - - SM00179: domain 2 of 18, from 723 to 765: score 33.4, E = 3e-05 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe iD C + +++C++G tC+N + +YrC C pGy+ ++++ C+ ef03457 723 GIDRCaagatnVCGPG----TCVNlPDGYRCvCSPGYQlhpsqAYCT 765 <-* ef03457 - - SM00181: domain 4 of 20, from 726 to 765: score 30.9, E = 0.00018 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe Ca + ++ C++G tC++ +++y+C C pGy++++++ +C ef03457 726 RCAagatnVCGPG------TCVnlpdGYRCvCS-PGYQLhpsqaYCT 765 <-* ef03457 - - SM00179: domain 3 of 18, from 766 to 808: score 51.7, E = 9.6e-11 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.......rnCe< D +EC ++pC G +CiN+vGSY+C C pGyt +++ ++ C+ ef03457 766 DDNEClrdPCKGKG---RCINrVGSYSCfCYPGYTlatsgatQECQ 808 -* ef03457 - - SM00181: domain 5 of 20, from 769 to 808: score 31.2, E = 0.00014 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.......rCe< eC+++pC G+Ci++ +sy+C C pGyt+ +++ ++ C+ ef03457 769 ECLrdPCKG-----KGRCInrvgSYSCfCY-PGYTLatsgatqECQ 808 -* ef03457 - - SM00179: domain 4 of 18, from 809 to 848: score 52.9, E = 4.1e-11 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<-* Di+EC+++++C+ G +C+N++GSY+C+C++Gy ++++C+ ef03457 809 DINECeqpgVCSGG----QCTNtEGSYHCeCDQGYImvrkGHCQ 848 SM00181: domain 6 of 20, from 812 to 848: score 29.7, E = 0.00041 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<-* eC++++ Cs G +C+++++sy+C+C +Gy+ ++++C+ ef03457 812 ECEqpgVCSGG------QCTntegSYHCeCD-QGYIMvrkgHCQ 848 SM00179: domain 5 of 18, from 849 to 888: score 49.9, E = 3.3e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC..CppGyt...rnCe<-* Di+EC++++ C+ G +C+N++GSY+C C +Gy++++++C+ ef03457 849 DINECrhpgTCPDG----RCVNsPGSYTClaCEEGYRgqsGSCV 888 SM00181: domain 7 of 20, from 852 to 888: score 27.3, E = 0.0021 *->eCa...pCsnGgtEqnGtCi....sytC..CpgpGytg...rCe<-* eC +++ C G +C+++++sytC C +Gy+g++++C+ ef03457 852 ECRhpgTCPDG------RCVnspgSYTClaCE-EGYRGqsgSCV 888 SM00179: domain 6 of 18, from 889 to 929: score 54.8, E = 1.1e-11 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- D++EC ++++C +G +C+N +GS+rC+C +Gy+ +++ + C+ ef03457 889 DVNECltpgVCAHG----KCTNlEGSFRCsCEQGYEvtsdeKGCQ 929 * ef03457 - - SM00181: domain 8 of 20, from 892 to 929: score 28.2, E = 0.0012 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C +G +C++ ++s++C+C +Gy+ +++++ C+ ef03457 892 ECLtpgVCAHG------KCTnlegSFRCsCE-QGYEVtsdekGCQ 929 * ef03457 - - SM00179: domain 7 of 18, from 930 to 971: score 41.3, E = 1.3e-07 *->DiDEC....pCqnGGptgtCiN.vGSYrC..CppGyt.....rnCe< D+DEC ++ C+ G C N++GS+ C+ C Gy + +++ Ce ef03457 930 DVDECasraSCPTG----LCLNtEGSFACsaCENGYWvnedgTACE 971 -* ef03457 - - SM00181: domain 9 of 20, from 933 to 971: score 16.7, E = 3.2 *->eCa...pCsnGgtEqnGtCi....sytC..CpgpGytg.....rCe< eCa++ C G C+++++s+ C+ C +Gy +++++ Ce ef03457 933 ECAsraSCPTG------LCLntegSFACsaCE-NGYWVnedgtACE 971 -* ef03457 - - SM00179: domain 8 of 18, from 972 to 1013: score 43.1, E = 3.7e-08 *->DiDEC....pCqnGGptgtCiN.vGSYrC..CppGyt.....rnCe< D DEC +++C+ G +C+N+ GS++C++C+ Gy++++ + +Ce ef03457 972 DLDECafpgVCPSG----VCTNtAGSFSCkdCDGGYRpsplgDSCE 1013 -* ef03457 - - SM00181: domain 10 of 20, from 975 to 1013: score 22.2, E = 0.075 *->eCa...pCsnGgtEqnGtCi....sytC..CpgpGytg.....rCe< eCa ++ C G +C+++ +s++C++C Gy+ ++ +++Ce ef03457 975 ECAfpgVCPSG------VCTntagSFSCkdCD-GGYRPsplgdSCE 1013 -* ef03457 - - SM00179: domain 9 of 18, from 1014 to 1054: score 54.3, E = 1.6e-11 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<- D+DEC+++++ C G C N+vGSY+C Cp+G++ +++ Ce ef03457 1014 DVDECedpqsSCLGG----ECKNtVGSYQClCPQGFQlangTVCE 1054 * ef03457 - - SM00181: domain 11 of 20, from 1017 to 1054: score 31.9, E = 8.9e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<- eC+++++ C G +C ++ +sy+C Cp +G+++ +++ Ce ef03457 1017 ECEdpqsSCLGG------ECKntvgSYQClCP-QGFQLangtVCE 1054 * ef03457 - - SM00179: domain 10 of 18, from 1055 to 1096: score 50.8, E = 1.7e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- D++EC +++ C ++G C N+ GS+ C C pG+ + ++++C+ ef03457 1055 DVNECmgeeHCAPHG---ECLNsHGSFFClCAPGFVsaeggTSCQ 1096 * ef03457 - - SM00181: domain 12 of 20, from 1058 to 1096: score 25.1, E = 0.0096 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC +++ C ++ G+C+++++s+ C C+ pG+ +++++C+ ef03457 1058 ECMgeeHCAPH-----GECLnshgSFFClCA-PGFVSaeggtSCQ 1096 * ef03457 - - SM00179: domain 11 of 18, from 1097 to 1137: score 48.7, E = 7.8e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- D+DEC +++pC G +C+N++GS+ C C G+++++ ++ C+ ef03457 1097 DVDECattdPCVGG----HCVNtEGSFNClCETGFQpspesGECV 1137 * ef03457 - - SM00181: domain 13 of 20, from 1100 to 1137: score 24.4, E = 0.016 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eCa+++pC G +C+++++s+ C C G++ +++++ C+ ef03457 1100 ECAttdPCVGG------HCVntegSFNClCE-TGFQPspesgECV 1137 * ef03457 - - SM00179: domain 12 of 18, from 1138 to 1181: score 43.3, E = 3.3e-08 *->DiDEC......pCqnGGptgtCiN.vGSYrC...CppGyt....rnC DiDEC++ ++++C+ +C+N++GSYrC +C+pG++ +++ C ef03457 1138 DIDECedygdpVCGTW----KCENsPGSYRCvlgCQPGFHmapnGDC 1180 e<-* + ef03457 1181 I 1181 SM00181: domain 14 of 20, from 1141 to 1181: score 12.1, E = 22 *->eCa.....pCsnGgtEqnGtCi....sytC...CpgpGytg....rC eC++ +++ C+ +C ++++sy+C +C+ pG++ +++ C ef03457 1141 ECEdygdpVCGT------WKCEnspgSYRCvlgCQ-PGFHMapngDC 1180 e<-* + ef03457 1181 I 1181 SM00179: domain 13 of 18, from 1182 to 1223: score 42.1, E = 7.3e-08 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- DiDEC +++ C+ +G C N++GS+rC C++G++ ++++ C+ ef03457 1182 DIDECandtMCGSHG---FCDNtDGSFRClCDQGFEispsgWDCV 1223 * ef03457 - - SM00181: domain 15 of 20, from 1185 to 1223: score 24.7, E = 0.013 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eCa+++ C+ + G C ++++s++C C +G++ ++++ C+ ef03457 1185 ECAndtMCGSH-----GFCDntdgSFRClCD-QGFEIspsgwDCV 1223 * ef03457 - - SM00179: domain 14 of 18, from 1224 to 1266: score 35.1, E = 9.3e-06 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt......rnCe D++EC+ +C+ + C+N +GS+ C C + + + ++C ef03457 1224 DVNECelmlaVCGA----ALCENvEGSFLClCASDLEeydaqeGHCR 1266 <-* ef03457 - - SM00181: domain 16 of 20, from 1227 to 1266: score 11.8, E = 23 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg......rCe eC+ C+ + C + ++s+ C C+ + + ++++C ef03457 1227 ECElmlaVCGA------ALCEnvegSFLClCA-SDLEEydaqegHCR 1266 <-* ef03457 - - SM00179: domain 15 of 18, from 1364 to 1406: score 47.4, E = 1.9e-09 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe D DEC ++++C+nG +C N+v +Y C C pG++ + +++ Ce ef03457 1364 DADECvifgpgLCPNG----RCLNtVPGYVClCNPGFHydashKKCE 1406 <-* ef03457 - - SM00181: domain 17 of 20, from 1367 to 1406: score 30.9, E = 0.00017 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe eC +++ C nG +C+++ ++y C C pG++ + +++ Ce ef03457 1367 ECVifgpgLCPNG------RCLntvpGYVClCN-PGFHYdashkKCE 1406 <-* ef03457 - - SM00179: domain 16 of 18, from 1407 to 1446: score 43.8, E = 2.2e-08 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<-* D DEC++ C nG C+N++GS++C C p t + ++++C ef03457 1407 DHDECqdlACENG----ECVNtEGSFHCfCSPPLTldlsqQRCM 1446 SM00181: domain 18 of 20, from 1410 to 1446: score 25.8, E = 0.0059 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<-* eC++ C+nG +C+++++s++C C p t++ +++rC ef03457 1410 ECQdlACENG------ECVntegSFHCfCS-PPLTLdlsqqRCM 1446 SM00179: domain 17 of 18, from 1612 to 1652: score 20.3, E = 0.0052 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- EC+ + C nG +C+ +Y+C+C +G++ + + C+ ef03457 1612 QAEECgilnGCENG----RCVRvREGYTCdCFEGFQldaahMACV 1652 * ef03457 - - SM00181: domain 19 of 20, from 1615 to 1652: score 32.6, E = 5.4e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC ++C+nG +C++ +++ytC+C +G++++ + C+ ef03457 1615 ECGilnGCENG------RCVrvreGYTCdCF-EGFQLdaahmACV 1652 * ef03457 - - SM00179: domain 18 of 18, from 1653 to 1697: score 52.1, E = 7.2e-11 *->DiDEC........pCqnGGptgtCiN.vGSYrC.CppGyt.....rn D++EC++ +++ +C +G C+N++GSYrC+C pGy ++++ ef03457 1653 DVNECddlngpavLCVHG----YCENtEGSYRChCSPGYVaeagpPH 1695 Ce<-* C+ ef03457 1696 CT 1697 SM00181: domain 20 of 20, from 1656 to 1697: score 26.5, E = 0.0036 *->eCa.......pCsnGgtEqnGtCi....sytC.CpgpGytg.....r eC++ +++ C +G C ++++sy+C+C pGy + ++++ ef03457 1656 ECDdlngpavLCVHG------YCEntegSYRChCS-PGYVAeagppH 1695 Ce<-* C ef03457 1696 CT 1697 //