hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-08480570/chunk_1/iprscan-20080808-08480570.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ef03678
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00482                                                 368.6   3.8e-106   1
SM00490                                                  73.6    2.5e-17   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00490      1/1      23   109 ..     1    86 []    73.6  2.5e-17
SM00482      1/1    1935  2174 ..     1   247 []   368.6 3.8e-106

Alignments of top-scoring domains:
SM00490: domain 1 of 1, from 23 to 109: score 73.6, E = 2.5e-17
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                        l   L++ +     +va +H+gl+ eeR+ i+ +Fr g i+vL a
     ef03678    23    SGLDSVLQKTV---PWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAA 66   

                   TdvaerGlDipgvdlVInydl.....pwspasyiQRiGRaGRaG<-*
                   T++++ G+++p +++VI+  +  +++p+++ +y Q++GRaGR G   
     ef03678    67 TSTLSSGVNLP-ARRVIIRTPifggrPLDILTYKQMVGRAGRKG    109  

SM00482: domain 1 of 1, from 1935 to 2174: score 368.6, E = 3.8e-106
                   *->GreIRraFvAepGyrwvlvsADYSQIELRiLAHLSgDhFklHGgtAl
                      ++++R+aFv+ pG +  +++ADYSQ+ELRiLAHLS+D          
     ef03678  1935    SISMRHAFVPFPGGS--ILAADYSQLELRILAHLSHD---------- 1969 

                   GwenLieaFnnGrDiHtkTAaaiFgVpeeevTpelRraAKaiNFGiiYGm
                     ++Li++ n+G+D+++ +Aa+++++++e+v ++lR++AK+i++GiiYGm
     ef03678  1970 --RRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGM 2017 

                   gqkFAfgLaeqlgpsIsraEAEElkelikkYfarfPgtrvkryikrtkkv
                   g   A++L+eq+g  I++++A   +++i+++ +r+ g  +++++++t  v
     ef03678  2018 G---AKSLGEQMG--IKENDA---ACYIDSFKSRYTG--INQFMTET--V 2055 

                   eearrkGyvtTlfGRRryipdinqSrnpvlragIsaLenlknnaaaERaA
                   + ++r+G+v+T++GRRry+p+i+ ++np+++            a+aER+A
     ef03678  2056 KNCKRDGFVQTILGRRRYLPGIK-DNNPYRK------------AHAERQA 2092 

                   vNapIQGsAADilKlAmikidkalkekgL.....................
                   +N+++QGsAADi+K+A ++i+k+l++++ + ++++++++  ++++++ ++
     ef03678  2093 INTIVQGSAADIVKIATVNIQKQLETFHStfkshghregmlqsdrtglsr 2142 

                   ............raRllLqWVHDElvfEvpeee<-*
                   +++ ++   + +++ ++Lq  HDEl++Ev ee+   
     ef03678  2143 krklqgmfcpirGGFFILQ-LHDELLYEVAEED    2174 

//